Detailed information NTG0349442

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GJD95_RS06590
• Genome accession: NZ_CP046006
• Coordinates: 1037980..1038972 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 1919D3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1032980..1043972

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GJD95_RS06560 (GJD95_06560)	ispD	1033041..1033751 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GJD95_RS06565 (GJD95_06565)	ispF	1033751..1034230 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GJD95_RS06570 (GJD95_06570)	truD	1034227..1035276 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
GJD95_RS06575 (GJD95_06575)	surE	1035257..1036018 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GJD95_RS06580 (GJD95_06580)	pcm	1036012..1036638 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GJD95_RS06585 (GJD95_06585)	nlpD	1036823..1037917 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
GJD95_RS06590 (GJD95_06590)	rpoS	1037980..1038972 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GJD95_RS06595 (GJD95_06595)	ygbN	1039066..1040430 (-)	1365	WP_000104429.1	GntP family transporter	-
GJD95_RS06600 (GJD95_06600)	ygbM	1040519..1041295 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
GJD95_RS06605 (GJD95_06605)	ygbL	1041300..1041938 (-)	639	WP_001278994.1	aldolase	-
GJD95_RS06610 (GJD95_06610)	otnK	1041935..1043197 (-)	1263	WP_097433311.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=349442 GJD95_RS06590 WP_000081550.1 1037980..1038972(+) (rpoS) [Escherichia coli strain 1919D3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=349442 GJD95_RS06590 WP_000081550.1 1037980..1038972(+) (rpoS) [Escherichia coli strain 1919D3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715