Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GJD94_RS09520 Genome accession   NZ_CP046003
Coordinates   1847540..1848964 (-) Length   474 a.a.
NCBI ID   WP_085438546.1    Uniprot ID   -
Organism   Escherichia coli strain 1916D6     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1842540..1853964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD94_RS09490 (GJD94_09485) yeeZ 1842595..1843419 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  GJD94_RS09495 (GJD94_09490) yeeY 1843465..1844394 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  GJD94_RS09500 (GJD94_09495) yoeI 1844609..1844671 (+) 63 WP_010723108.1 membrane protein YoeI -
  GJD94_RS09505 (GJD94_09500) plaP 1844661..1846019 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GJD94_RS09510 (GJD94_09505) tsuA 1846198..1847256 (+) 1059 WP_064670362.1 thiosulfate utilization transporter TsuA/YeeE -
  GJD94_RS09515 (GJD94_09510) tsuB 1847270..1847497 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GJD94_RS09520 (GJD94_09515) sbcB 1847540..1848964 (-) 1425 WP_085438546.1 exodeoxyribonuclease I Machinery gene
  GJD94_RS09525 (GJD94_09520) - 1849146..1850324 (+) 1179 WP_048266533.1 site-specific integrase -
  GJD94_RS09530 (GJD94_09525) - 1850305..1850496 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  GJD94_RS09535 (GJD94_09530) - 1850836..1851003 (-) 168 WP_000545720.1 hypothetical protein -
  GJD94_RS09540 (GJD94_09535) - 1851104..1851406 (-) 303 WP_154205236.1 Lar family restriction alleviation protein -
  GJD94_RS09545 (GJD94_09540) - 1851403..1851900 (-) 498 WP_249398383.1 DUF550 domain-containing protein -
  GJD94_RS23900 - 1851874..1851999 (-) 126 Protein_1745 DUF550 domain-containing protein -
  GJD94_RS09550 (GJD94_09545) - 1852002..1852193 (-) 192 WP_000348980.1 hypothetical protein -
  GJD94_RS09555 (GJD94_09550) - 1852195..1852602 (-) 408 WP_032285064.1 ead/Ea22-like family protein -
  GJD94_RS09560 (GJD94_09555) - 1852604..1852903 (-) 300 WP_000118152.1 hypothetical protein -
  GJD94_RS09565 (GJD94_09560) - 1852900..1853067 (-) 168 WP_016063110.1 DUF2737 family protein -
  GJD94_RS09570 (GJD94_09565) - 1853078..1853371 (-) 294 WP_001388110.1 phage anti-RecBCD protein -
  GJD94_RS09575 (GJD94_09570) ssb 1853385..1853891 (-) 507 WP_000168274.1 single-stranded DNA-binding protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54398.72 Da        Isoelectric Point: 5.4700

>NTDB_id=349374 GJD94_RS09520 WP_085438546.1 1847540..1848964(-) (sbcB) [Escherichia coli strain 1916D6]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=349374 GJD94_RS09520 WP_085438546.1 1847540..1848964(-) (sbcB) [Escherichia coli strain 1916D6]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATCTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCCGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAGCTGGTAAAAATGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAATATG
CCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584

Multiple sequence alignment