Detailed information NTG0349361

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GJD94_RS05820
• Genome accession: NZ_CP046003
• Coordinates: 1058491..1059483 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 1916D6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1053491..1064483

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GJD94_RS05790 (GJD94_05790)	ispD	1053552..1054262 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GJD94_RS05795 (GJD94_05795)	ispF	1054262..1054741 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GJD94_RS05800 (GJD94_05800)	truD	1054738..1055787 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
GJD94_RS05805 (GJD94_05805)	surE	1055768..1056529 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GJD94_RS05810 (GJD94_05810)	pcm	1056523..1057149 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GJD94_RS05815 (GJD94_05815)	nlpD	1057334..1058428 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
GJD94_RS05820 (GJD94_05820)	rpoS	1058491..1059483 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GJD94_RS05825 (GJD94_05825)	ygbN	1059577..1060941 (-)	1365	WP_000104441.1	GntP family transporter	-
GJD94_RS05830 (GJD94_05830)	ygbM	1061030..1061806 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
GJD94_RS05835 (GJD94_05835)	ygbL	1061811..1062449 (-)	639	WP_001278994.1	aldolase	-
GJD94_RS05840 (GJD94_05840)	otnK	1062446..1063708 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=349361 GJD94_RS05820 WP_000081550.1 1058491..1059483(+) (rpoS) [Escherichia coli strain 1916D6]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=349361 GJD94_RS05820 WP_000081550.1 1058491..1059483(+) (rpoS) [Escherichia coli strain 1916D6]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715