Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KGNDJEFE_RS00445 Genome accession   NZ_CP036523
Coordinates   78594..79973 (-) Length   459 a.a.
NCBI ID   WP_006440460.1    Uniprot ID   -
Organism   Peptacetobacter hiranonis strain DSM 13275     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 73594..84973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGNDJEFE_RS00425 (KGNDJEFE_00085) - 74402..75316 (-) 915 WP_006440464.1 transketolase family protein -
  KGNDJEFE_RS00430 (KGNDJEFE_00086) - 75316..76137 (-) 822 WP_006440463.1 transketolase -
  KGNDJEFE_RS00435 (KGNDJEFE_00087) - 76221..77342 (-) 1122 WP_006440462.1 PIN/TRAM domain-containing protein -
  KGNDJEFE_RS00440 (KGNDJEFE_00088) disA 77516..78586 (-) 1071 WP_006440461.1 DNA integrity scanning diadenylate cyclase DisA -
  KGNDJEFE_RS00445 (KGNDJEFE_00089) radA 78594..79973 (-) 1380 WP_006440460.1 DNA repair protein RadA Machinery gene
  KGNDJEFE_RS00450 (KGNDJEFE_00090) - 80093..82018 (-) 1926 WP_040410584.1 translation factor GTPase family protein -
  KGNDJEFE_RS00455 (KGNDJEFE_00091) bilS 82216..82716 (-) 501 WP_006440458.1 flavodoxin family protein BilS -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50597.34 Da        Isoelectric Point: 8.0229

>NTDB_id=349350 KGNDJEFE_RS00445 WP_006440460.1 78594..79973(-) (radA) [Peptacetobacter hiranonis strain DSM 13275]
MAKIKTKYVCQSCGYENPKWLGKCPECMKWNTFVEEIEDKSSKSNHRETFVIDKSSQKPVNINSITIKHEERFSSGINEL
NRVLGGGIVRGSLVLVGGDPGIGKSTLLLQVSESVAQSGKKVLYISGEESESQIKMRAERLNAKSENLFIMAENNLNIIE
HNLEGFDPDLIILDSIQTVFTPDIASAPGTVSQIKEGTSRFMRISKKMGISTFVVGHVTKEGALAGPKIMEHMVDTVLYF
EGERYNTYRLIRAVKNRFGSTNELGVFEMSEKGLQELENPSKALISEKPENASGSVIVSTVEGTRPMLLELQALVSPTSF
GIPRRTATGIDFNRVNLLLAVLEKRAGMQIQNQDVYLNIVGGIKINEPSMDLGVILAVASGFRNIPISGEVAVTGEVGLT
GEIRGVSYIEKRISECRKLGFKKIIIPKSNYEAVKDVKGIEIWPVENVRQAINMVLRGE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=349350 KGNDJEFE_RS00445 WP_006440460.1 78594..79973(-) (radA) [Peptacetobacter hiranonis strain DSM 13275]
ATGGCAAAAATAAAAACAAAATACGTATGTCAGTCATGTGGATACGAAAATCCAAAATGGCTTGGAAAATGTCCAGAATG
TATGAAATGGAATACATTTGTGGAGGAAATAGAAGATAAAAGTTCAAAAAGTAATCATAGAGAAACTTTTGTAATAGATA
AATCATCACAGAAACCTGTAAACATAAACTCAATAACAATAAAACACGAAGAGAGATTTTCTAGTGGAATAAACGAGTTA
AACAGAGTATTAGGTGGTGGAATAGTTAGAGGATCACTTGTACTTGTAGGTGGAGACCCTGGGATTGGTAAATCAACACT
ACTTTTACAAGTATCTGAAAGTGTTGCACAATCAGGAAAAAAAGTGCTATATATATCTGGAGAAGAATCAGAATCTCAGA
TAAAAATGAGGGCAGAAAGATTAAATGCTAAATCGGAAAATCTGTTTATAATGGCAGAAAACAACTTAAACATAATAGAA
CATAACCTAGAAGGATTTGACCCAGACCTTATAATACTGGACTCAATCCAAACAGTATTCACACCGGACATAGCTTCTGC
ACCGGGAACAGTTAGCCAGATAAAAGAGGGAACTTCTAGATTTATGAGAATTTCTAAAAAAATGGGAATATCTACATTTG
TCGTTGGACATGTAACAAAAGAAGGTGCTTTAGCGGGACCAAAGATAATGGAGCATATGGTCGATACAGTACTTTACTTT
GAAGGTGAAAGATATAATACATACAGACTTATAAGAGCTGTAAAAAATAGATTTGGTTCGACAAATGAACTAGGTGTATT
TGAAATGAGTGAAAAAGGACTTCAAGAGCTTGAAAATCCTTCAAAAGCGCTTATCTCAGAAAAACCAGAAAACGCATCTG
GATCAGTAATAGTATCTACTGTAGAGGGAACAAGACCAATGCTTCTTGAACTTCAGGCACTTGTATCTCCTACTAGCTTT
GGGATACCAAGAAGAACAGCTACAGGAATAGATTTTAATAGGGTAAATCTACTACTTGCTGTACTAGAAAAAAGAGCTGG
AATGCAGATACAAAATCAAGACGTATACTTAAACATAGTAGGTGGAATAAAAATAAATGAACCATCTATGGACTTAGGGG
TTATATTAGCAGTTGCATCTGGCTTTAGAAACATACCGATAAGTGGAGAAGTTGCGGTTACAGGAGAAGTTGGACTTACT
GGAGAAATAAGGGGAGTAAGCTACATTGAAAAAAGAATATCTGAATGCAGAAAATTAGGCTTCAAAAAAATAATAATTCC
AAAATCTAATTATGAGGCTGTAAAAGACGTAAAAGGTATAGAAATATGGCCAGTTGAAAATGTAAGACAGGCTATAAATA
TGGTATTGAGGGGAGAGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-222)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(352-456)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

55.12

100

0.551
  radA Streptococcus mitis NCTC 12261

51.974

99.346

0.516
  radA Streptococcus pneumoniae Rx1

51.974

99.346

0.516
  radA Streptococcus pneumoniae D39

51.974

99.346

0.516
  radA Streptococcus pneumoniae R6

51.974

99.346

0.516
  radA Streptococcus pneumoniae TIGR4

51.974

99.346

0.516
  radA Streptococcus mitis SK321

51.754

99.346

0.514

Multiple sequence alignment