Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   SYNGTI_RS11185 Genome accession   NC_017038
Coordinates   2403128..2403859 (-) Length   243 a.a.
NCBI ID   WP_010873351.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. GT-I     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2398128..2408859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNGTI_RS11160 (SYNGTI_2153) secD 2398633..2400051 (+) 1419 WP_010873346.1 protein translocase subunit SecD -
  SYNGTI_RS11165 (SYNGTI_2154) secF 2400112..2401059 (+) 948 WP_010873347.1 protein translocase subunit SecF -
  SYNGTI_RS11170 (SYNGTI_2155) lpxD 2401192..2402226 (+) 1035 WP_010873348.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  SYNGTI_RS11175 (SYNGTI_2156) rplT 2402334..2402687 (-) 354 WP_010873349.1 50S ribosomal protein L20 -
  SYNGTI_RS11180 (SYNGTI_2157) rpmI 2402828..2403031 (-) 204 WP_010873350.1 50S ribosomal protein L35 -
  SYNGTI_RS11185 (SYNGTI_2158) ysxA/radC 2403128..2403859 (-) 732 WP_010873351.1 DNA repair protein RadC Machinery gene
  SYNGTI_RS11190 (SYNGTI_2159) - 2403849..2404685 (-) 837 WP_010873352.1 rhodanese-related sulfurtransferase -
  SYNGTI_RS17430 (SYNGTI_2160) - 2404955..2405131 (+) 177 WP_010873353.1 hypothetical protein -
  SYNGTI_RS11200 (SYNGTI_2161) urtD 2405284..2406405 (-) 1122 WP_010873354.1 urea ABC transporter ATP-binding protein UrtD -
  SYNGTI_RS11205 (SYNGTI_2162) - 2406588..2407262 (-) 675 WP_014407133.1 hypothetical protein -
  SYNGTI_RS11210 (SYNGTI_2163) - 2407290..2407643 (-) 354 WP_020862192.1 hypothetical protein -
  SYNGTI_RS11215 (SYNGTI_2164) - 2407748..2408632 (-) 885 WP_010873358.1 ABC transporter permease -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26973.26 Da        Isoelectric Point: 7.2361

>NTDB_id=34934 SYNGTI_RS11185 WP_010873351.1 2403128..2403859(-) (ysxA/radC) [Synechocystis sp. PCC 6803 substr. GT-I]
MSYSLRIADLPEDERPREKLLKYGAKHLGNAELIAILLATGQGKGKLSAVGLGQYILQQLGQNRQDPMDVLRNIHPQELI
AFPGIGPAKATTILAAVELGKRVFQSRPLEKMVVDSPEAAAIALSQDLMWQTQEHFAIVMLDVKNRLLATKVITIGTATE
TLIHPREIFREVIKQGATRLIVAHNHPSGGLEPSPEDIRLTEFLLQGAQYLQIPVLDHLILGHGKHQSLRQCTDLWERFP
QGD

Nucleotide


Download         Length: 732 bp        

>NTDB_id=34934 SYNGTI_RS11185 WP_010873351.1 2403128..2403859(-) (ysxA/radC) [Synechocystis sp. PCC 6803 substr. GT-I]
ATGAGTTATAGCCTGAGAATTGCCGATCTACCGGAGGATGAACGCCCCAGGGAAAAATTGCTCAAATACGGGGCCAAGCA
TCTGGGGAATGCTGAATTGATCGCCATTCTCTTGGCCACAGGTCAAGGCAAAGGCAAGCTGTCGGCGGTGGGTCTGGGGC
AATATATTTTGCAACAGTTGGGACAAAATCGTCAGGACCCCATGGACGTGTTGCGTAATATCCACCCTCAGGAATTGATT
GCTTTTCCCGGCATTGGTCCCGCTAAGGCCACCACGATTTTAGCGGCGGTAGAATTGGGTAAACGGGTGTTCCAGAGTCG
TCCCTTGGAAAAAATGGTGGTGGATAGTCCCGAAGCGGCGGCGATCGCCTTGAGCCAGGATTTGATGTGGCAGACCCAGG
AACATTTTGCCATTGTCATGCTAGACGTAAAAAACCGTTTGCTGGCGACCAAAGTGATTACCATTGGCACCGCCACAGAG
ACCCTAATTCACCCCAGGGAAATCTTTCGGGAGGTGATCAAACAGGGTGCCACCAGGCTGATTGTGGCCCATAACCATCC
CTCCGGTGGGCTAGAGCCGAGCCCGGAAGATATCAGGCTGACAGAATTCCTACTCCAGGGGGCCCAATACTTGCAAATTC
CGGTATTGGACCATCTCATTTTGGGCCACGGCAAGCACCAAAGTTTGCGGCAATGCACAGATCTGTGGGAGCGTTTTCCC
CAGGGAGATTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(7-91)

RadC-like JAB domain (RadC)

(115-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

40.529

93.416

0.379

Multiple sequence alignment