Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GJD92_RS17355 Genome accession   NZ_CP046000
Coordinates   3472246..3472851 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 1916D18     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3467246..3477851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD92_RS17335 (GJD92_17335) aes 3467387..3468346 (+) 960 WP_000801838.1 acetyl esterase -
  GJD92_RS17340 (GJD92_17340) hemH 3468343..3469305 (-) 963 WP_001250120.1 ferrochelatase -
  GJD92_RS17345 (GJD92_17345) adk 3469437..3470081 (-) 645 WP_001345715.1 adenylate kinase -
  GJD92_RS17350 (GJD92_17350) htpG 3470262..3472136 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  GJD92_RS17355 (GJD92_17355) recR 3472246..3472851 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  GJD92_RS17360 (GJD92_17360) ybaB 3472851..3473180 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  GJD92_RS17365 (GJD92_17365) dnaX 3473233..3475164 (-) 1932 WP_000122007.1 DNA polymerase III subunit gamma/tau -
  GJD92_RS17370 (GJD92_17370) apt 3475293..3475844 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  GJD92_RS17375 (GJD92_17375) ybaN 3475997..3476374 (-) 378 WP_001188905.1 DUF454 family protein -
  GJD92_RS17380 (GJD92_17380) priC 3476444..3476971 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  GJD92_RS17385 (GJD92_17385) rsmS 3476985..3477146 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  GJD92_RS24425 - 3477199..3477297 (-) 99 Protein_3306 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=349316 GJD92_RS17355 WP_001195025.1 3472246..3472851(-) (recR) [Escherichia coli strain 1916D18]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=349316 GJD92_RS17355 WP_001195025.1 3472246..3472851(-) (recR) [Escherichia coli strain 1916D18]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443