Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GJD92_RS06355 Genome accession   NZ_CP046000
Coordinates   1175829..1176344 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 1916D18     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1170829..1181344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD92_RS06310 (GJD92_06310) csrA 1171416..1171601 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  GJD92_RS06340 (GJD92_06340) yqaB 1173059..1173625 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GJD92_RS06345 (GJD92_06345) yqaA 1173622..1174050 (+) 429 WP_001287457.1 YqaA family protein -
  GJD92_RS06350 (GJD92_06350) gshA 1174123..1175679 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  GJD92_RS06355 (GJD92_06355) luxS 1175829..1176344 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  GJD92_RS06360 (GJD92_06360) emrB 1176408..1177946 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  GJD92_RS06365 (GJD92_06365) emrA 1177963..1179135 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  GJD92_RS06370 (GJD92_06370) emrR 1179262..1179792 (-) 531 WP_000378435.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  GJD92_RS06375 (GJD92_06375) ygaH 1179883..1180218 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  GJD92_RS06380 (GJD92_06380) ygaZ 1180208..1180945 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=349288 GJD92_RS06355 WP_001130211.1 1175829..1176344(+) (luxS) [Escherichia coli strain 1916D18]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=349288 GJD92_RS06355 WP_001130211.1 1175829..1176344(+) (luxS) [Escherichia coli strain 1916D18]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment