Detailed information NTG0349285

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GJD92_RS06005
• Genome accession: NZ_CP046000
• Coordinates: 1104736..1105728 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 1916D18
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1099736..1110728

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GJD92_RS05975 (GJD92_05975)	ispD	1099797..1100507 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GJD92_RS05980 (GJD92_05980)	ispF	1100507..1100986 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GJD92_RS05985 (GJD92_05985)	truD	1100983..1102032 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
GJD92_RS05990 (GJD92_05990)	surE	1102013..1102774 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GJD92_RS05995 (GJD92_05995)	pcm	1102768..1103394 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GJD92_RS06000 (GJD92_06000)	nlpD	1103579..1104673 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
GJD92_RS06005 (GJD92_06005)	rpoS	1104736..1105728 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GJD92_RS06010 (GJD92_06010)	-	1105849..1106256 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
GJD92_RS06015 (GJD92_06015)	-	1106403..1106996 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
GJD92_RS06020 (GJD92_06020)	-	1106996..1108423 (+)	1428	WP_000863194.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
GJD92_RS06025 (GJD92_06025)	-	1108434..1108670 (+)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
GJD92_RS06030 (GJD92_06030)	ygbN	1108710..1110074 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=349285 GJD92_RS06005 WP_000081550.1 1104736..1105728(+) (rpoS) [Escherichia coli strain 1916D18]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=349285 GJD92_RS06005 WP_000081550.1 1104736..1105728(+) (rpoS) [Escherichia coli strain 1916D18]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715