Detailed information NTG0349223

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: EZZ25_RS05100
• Genome accession: NZ_CP036499
• Coordinates: 1052396..1053403 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain 20000
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1047396..1058403

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EZZ25_RS05080 (EZZ25_05080)	metJ	1047399..1047716 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
EZZ25_RS05085 (EZZ25_05085)	-	1047828..1049105 (-)	1278	WP_001278591.1	malic enzyme-like NAD(P)-binding protein	-
EZZ25_RS05090 (EZZ25_05090)	rpmE	1049413..1049631 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
EZZ25_RS05095 (EZZ25_05095)	priA	1049886..1052090 (+)	2205	WP_088124515.1	primosomal protein N'	-
EZZ25_RS05100 (EZZ25_05100)	cytR	1052396..1053403 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
EZZ25_RS05105 (EZZ25_05105)	-	1053575..1054126 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
EZZ25_RS05110 (EZZ25_05110)	hslV	1054263..1054820 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
EZZ25_RS05115 (EZZ25_05115)	hslU	1054886..1056217 (+)	1332	WP_069731277.1	HslU--HslV peptidase ATPase subunit	-
EZZ25_RS05120 (EZZ25_05120)	-	1056321..1057238 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
EZZ25_RS05125 (EZZ25_05125)	rraA	1057313..1057828 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=349223 EZZ25_RS05100 WP_000224452.1 1052396..1053403(+) (cytR) [Vibrio cholerae strain 20000]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=349223 EZZ25_RS05100 WP_000224452.1 1052396..1053403(+) (cytR) [Vibrio cholerae strain 20000]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGTATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCCGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACGACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTCGAATTATTGCGCGGACATGATGTGCGTGCTGGATCGCGTCTTTTGGAG
ACCAAGTTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904