Detailed information NTG0349211

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EZZ25_RS01770
• Genome accession: NZ_CP036499
• Coordinates: 381097..382104 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116735.1
• Uniprot ID: A0A085SEX1
• Organism: Vibrio cholerae strain 20000
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 376097..387104

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EZZ25_RS01760 (EZZ25_01760)	cysM	377258..378145 (+)	888	WP_069503817.1	cysteine synthase CysM	-
EZZ25_RS01765 (EZZ25_01765)	mutS	378413..381001 (+)	2589	WP_088127525.1	DNA mismatch repair protein MutS	-
EZZ25_RS01770 (EZZ25_01770)	rpoS	381097..382104 (-)	1008	WP_000116735.1	RNA polymerase sigma factor RpoS	Regulator
EZZ25_RS01775 (EZZ25_01775)	nlpD	382178..383113 (-)	936	WP_000177561.1	murein hydrolase activator NlpD	-
EZZ25_RS01780 (EZZ25_01780)	-	383113..383739 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EZZ25_RS01785 (EZZ25_01785)	surE	383732..384484 (-)	753	WP_165490511.1	5'/3'-nucleotidase SurE	-
EZZ25_RS01790 (EZZ25_01790)	truD	384486..385571 (-)	1086	WP_000129763.1	tRNA pseudouridine(13) synthase TruD	-
EZZ25_RS01795 (EZZ25_01795)	ispF	385601..386077 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EZZ25_RS01800 (EZZ25_01800)	ispD	386074..386772 (-)	699	WP_088124616.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EZZ25_RS01805 (EZZ25_01805)	ftsB	386769..387053 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38504.37 Da
• Isoelectric Point: 4.3648

>NTDB_id=349211 EZZ25_RS01770 WP_000116735.1 381097..382104(-) (rpoS) [Vibrio cholerae strain 20000]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=349211 EZZ25_RS01770 WP_000116735.1 381097..382104(-) (rpoS) [Vibrio cholerae strain 20000]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCACACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGATATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGATTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCTCTGTTTAACGTCGAATACGACAACTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

3D structure

• AlphaFold DB: A0A085SEX1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.701	100	0.997