Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EZZ25_RS01630 Genome accession   NZ_CP036499
Coordinates   354609..355127 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain 20000     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 349609..360127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZZ25_RS01605 (EZZ25_01605) rimM 349718..350272 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  EZZ25_RS01610 (EZZ25_01610) rpsP 350300..350548 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  EZZ25_RS01615 (EZZ25_01615) ffh 350784..352169 (-) 1386 WP_000462715.1 signal recognition particle protein -
  EZZ25_RS01620 (EZZ25_01620) - 352382..353176 (+) 795 WP_000369279.1 inner membrane protein YpjD -
  EZZ25_RS01625 (EZZ25_01625) - 353259..354539 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  EZZ25_RS01630 (EZZ25_01630) luxS 354609..355127 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  EZZ25_RS01635 (EZZ25_01635) gshA 355176..356750 (-) 1575 WP_000032608.1 glutamate--cysteine ligase -
  EZZ25_RS01640 (EZZ25_01640) - 356862..359717 (-) 2856 WP_001233045.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=349208 EZZ25_RS01630 WP_001130227.1 354609..355127(-) (luxS) [Vibrio cholerae strain 20000]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=349208 EZZ25_RS01630 WP_001130227.1 354609..355127(-) (luxS) [Vibrio cholerae strain 20000]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGTTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment