Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GI529_RS00530 Genome accession   NZ_CP045977
Coordinates   119914..120354 (-) Length   146 a.a.
NCBI ID   WP_000360904.1    Uniprot ID   P36647
Organism   Escherichia coli strain INSC1002     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 114914..125354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GI529_RS00510 (b0103) coaE 115404..116024 (-) 621 WP_001269520.1 dephospho-CoA kinase -
  GI529_RS21880 - 116049..116093 (+) 45 WP_120795372.1 protein YacM -
  GI529_RS00515 (GI529_00515) guaC 116249..117292 (+) 1044 WP_001217335.1 GMP reductase -
  GI529_RS00520 (b0106) hofC 117327..118529 (-) 1203 WP_000157266.1 protein transport protein HofC -
  GI529_RS00525 (GI529_00525) pilB 118519..119904 (-) 1386 WP_001025145.1 type II secretion system protein GspE Machinery gene
  GI529_RS00530 (GI529_00530) pilA 119914..120354 (-) 441 WP_000360904.1 prepilin peptidase-dependent pilin Machinery gene
  GI529_RS00535 (GI529_00535) nadC 120557..121450 (-) 894 WP_001135174.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GI529_RS00540 (b0110) ampD 121538..122089 (+) 552 WP_000923721.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GI529_RS00545 (GI529_00545) ampE 122086..122940 (+) 855 WP_000172005.1 beta-lactamase regulator AmpE -
  GI529_RS00550 (GI529_00550) aroP 122983..124356 (-) 1374 WP_000969915.1 aromatic amino acid transporter AroP -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15621.75 Da        Isoelectric Point: 4.3938

>NTDB_id=349185 GI529_RS00530 WP_000360904.1 119914..120354(-) (pilA) [Escherichia coli strain INSC1002]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=349185 GI529_RS00530 WP_000360904.1 119914..120354(-) (pilA) [Escherichia coli strain INSC1002]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P36647

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363