Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GJD97_RS21220 Genome accession   NZ_CP045975
Coordinates   4186258..4186863 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain AUSMDU00002545     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4181258..4191863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD97_RS21200 (GJD97_21200) aes 4181399..4182358 (+) 960 WP_000801803.1 acetyl esterase -
  GJD97_RS21205 (GJD97_21205) hemH 4182355..4183317 (-) 963 WP_001250105.1 ferrochelatase -
  GJD97_RS21210 (GJD97_21210) adk 4183449..4184093 (-) 645 WP_001220233.1 adenylate kinase -
  GJD97_RS21215 (GJD97_21215) htpG 4184274..4186148 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  GJD97_RS21220 (GJD97_21220) recR 4186258..4186863 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  GJD97_RS21225 (GJD97_21225) ybaB 4186863..4187192 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  GJD97_RS21230 (GJD97_21230) dnaX 4187245..4189176 (-) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  GJD97_RS21235 (GJD97_21235) apt 4189305..4189856 (-) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  GJD97_RS21240 (GJD97_21240) ybaN 4190009..4190386 (-) 378 WP_001188905.1 DUF454 family protein -
  GJD97_RS21245 (GJD97_21245) priC 4190456..4190983 (+) 528 WP_000844886.1 primosomal replication protein N'' -
  GJD97_RS21250 (GJD97_21250) rsmS 4190997..4191161 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=349157 GJD97_RS21220 WP_001195025.1 4186258..4186863(-) (recR) [Escherichia coli strain AUSMDU00002545]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=349157 GJD97_RS21220 WP_001195025.1 4186258..4186863(-) (recR) [Escherichia coli strain AUSMDU00002545]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment