Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GJD98_RS14200 Genome accession   NZ_CP045974
Coordinates   3154987..3155580 (+) Length   197 a.a.
NCBI ID   WP_015443954.1    Uniprot ID   -
Organism   Legionella pneumophila strain AUSMDU00010536 isolate SBT211     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3149987..3160580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD98_RS14190 (GJD98_14190) dnaX 3152936..3154606 (+) 1671 WP_010948444.1 DNA polymerase III subunit gamma/tau -
  GJD98_RS14195 (GJD98_14195) - 3154640..3154978 (+) 339 WP_010948445.1 YbaB/EbfC family nucleoid-associated protein -
  GJD98_RS14200 (GJD98_14200) recR 3154987..3155580 (+) 594 WP_015443954.1 recombination mediator RecR Machinery gene
  GJD98_RS14205 (GJD98_14205) - 3155573..3156433 (+) 861 WP_010948447.1 DUF547 domain-containing protein -
  GJD98_RS14210 (GJD98_14210) - 3156430..3158427 (+) 1998 WP_010948448.1 sulfatase-like hydrolase/transferase -
  GJD98_RS14215 (GJD98_14215) - 3158664..3160130 (-) 1467 WP_015443951.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21662.93 Da        Isoelectric Point: 6.6782

>NTDB_id=349099 GJD98_RS14200 WP_015443954.1 3154987..3155580(+) (recR) [Legionella pneumophila strain AUSMDU00010536 isolate SBT211]
MDALSRLVEALRCLPGVGPKSAQRMVFHLLQHQRQRGLHLASCLEQAMKHISHCQQCNNYTEQTLCALCQNPNRDSTLLC
VVESPADVSAIEQSNSFQGKYFVLMGKISPLDGLGPDDIGLPKLKELITREKIQEVILALSPSVESQTTIHFIHQLLKDE
TVNISQLAHGIPSGGELEFLDGNTISSALKNRAVINV

Nucleotide


Download         Length: 594 bp        

>NTDB_id=349099 GJD98_RS14200 WP_015443954.1 3154987..3155580(+) (recR) [Legionella pneumophila strain AUSMDU00010536 isolate SBT211]
ATGGATGCTCTAAGCCGATTGGTAGAGGCGCTTCGCTGTCTTCCCGGTGTGGGACCAAAATCAGCACAAAGGATGGTGTT
CCATTTATTGCAGCACCAAAGGCAGCGAGGTTTACACCTTGCCTCCTGTTTAGAACAGGCAATGAAGCACATTAGTCATT
GTCAGCAGTGTAATAATTACACCGAACAAACACTGTGTGCTCTTTGTCAAAATCCTAATCGAGATTCGACATTGCTTTGT
GTGGTAGAGAGTCCAGCAGATGTTTCTGCCATAGAACAAAGCAATTCCTTTCAAGGTAAGTATTTTGTCCTTATGGGAAA
AATTTCTCCTCTTGATGGCTTGGGACCTGATGACATAGGTCTACCGAAACTTAAGGAGTTAATTACTAGGGAAAAAATTC
AGGAAGTTATTCTTGCATTAAGCCCCAGTGTTGAAAGCCAGACCACAATTCATTTTATTCATCAGTTGCTAAAGGATGAA
ACCGTCAATATCAGTCAGTTAGCACATGGAATACCATCAGGTGGTGAATTAGAATTTTTAGATGGGAATACTATAAGCAG
TGCCCTTAAGAACAGAGCTGTGATTAATGTCTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-75)

Toprim domain (Toprim_4)

(79-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.513

98.985

0.401
  recR Bacillus subtilis subsp. subtilis str. 168

39.267

96.954

0.381