Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   EZZ79_RS08260 Genome accession   NZ_CP036493
Coordinates   1797772..1798449 (+) Length   225 a.a.
NCBI ID   WP_024664693.1    Uniprot ID   -
Organism   Pseudomonas syringae strain Psy33     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1792772..1803449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZZ79_RS08240 (EZZ79_08590) - 1792813..1793436 (+) 624 WP_004418610.1 glutathione S-transferase -
  EZZ79_RS08245 (EZZ79_08595) - 1793620..1794552 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  EZZ79_RS08250 (EZZ79_08600) - 1794549..1795337 (+) 789 WP_003421319.1 ABC transporter permease -
  EZZ79_RS08255 (EZZ79_08605) comA 1795474..1797690 (+) 2217 WP_024664694.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EZZ79_RS08260 (EZZ79_08610) exbB 1797772..1798449 (+) 678 WP_024664693.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  EZZ79_RS08265 (EZZ79_08615) - 1798446..1798877 (+) 432 WP_003317468.1 biopolymer transporter ExbD -
  EZZ79_RS08270 (EZZ79_08620) lpxK 1798877..1799872 (+) 996 WP_024648606.1 tetraacyldisaccharide 4'-kinase -
  EZZ79_RS08275 (EZZ79_08625) - 1799890..1800075 (+) 186 WP_002552679.1 Trm112 family protein -
  EZZ79_RS08280 (EZZ79_08630) kdsB 1800072..1800836 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EZZ79_RS08285 (EZZ79_08635) murB 1800871..1801890 (+) 1020 WP_017279274.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24198.49 Da        Isoelectric Point: 8.5280

>NTDB_id=349098 EZZ79_RS08260 WP_024664693.1 1797772..1798449(+) (exbB) [Pseudomonas syringae strain Psy33]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKVDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=349098 EZZ79_RS08260 WP_024664693.1 1797772..1798449(+) (exbB) [Pseudomonas syringae strain Psy33]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCAT
CGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCACCGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAA
AGAAGCTGGACGGCGAAAAACTCAAGCAGCTGCGCGCTGACTCGCCGCTGGGCGAAATCCTTGCCGCAGGTCTGGCCAAT
TCCAGGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAAGCCGCTGCCCGGGTCATTCATGAGCTGGAGCGCTACCT
CAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGCTGCTTGGTTTGCTAGGCACCGTGCTGGGCATGATCGATATCTTCG
GCTCGTTCAACAGTTCCGGGGCCACCGCCAATGCCGGCGTGCTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCG
TCGGGTCTTATCGTCGCGATCCCGGCGATTTTCTTTCATCGCTTCCTGCAGAGCCGCGTCGATGAGTTGGTGGTCGGCAT
GGAACAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAGGTCGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738

Multiple sequence alignment