Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GJE04_RS08845 Genome accession   NZ_CP045961
Coordinates   1667475..1667981 (+) Length   168 a.a.
NCBI ID   WP_002218101.1    Uniprot ID   A1KW60
Organism   Neisseria meningitidis strain AUSMDU00010537     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1662475..1672981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE04_RS08810 (GJE04_08810) - 1662658..1663311 (+) 654 WP_002248550.1 IS1595-like element IS1016C family transposase -
  GJE04_RS08815 (GJE04_08815) - 1663524..1665059 (+) 1536 WP_002248551.1 sodium-dependent transporter -
  GJE04_RS08820 (GJE04_08820) - 1665056..1665148 (+) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -
  GJE04_RS08825 (GJE04_08825) lysA 1665208..1666428 (-) 1221 WP_002248552.1 diaminopimelate decarboxylase -
  GJE04_RS08830 (GJE04_08830) lptM 1666439..1666609 (-) 171 WP_002225850.1 LPS translocon maturation chaperone LptM -
  GJE04_RS08835 (GJE04_08835) cyaY 1666680..1667003 (+) 324 WP_002219897.1 iron donor protein CyaY -
  GJE04_RS08840 (GJE04_08840) - 1667034..1667453 (+) 420 WP_002218100.1 DUF2251 domain-containing protein -
  GJE04_RS08845 (GJE04_08845) luxS 1667475..1667981 (+) 507 WP_002218101.1 S-ribosylhomocysteine lyase Regulator
  GJE04_RS08850 (GJE04_08850) polA 1668127..1670919 (+) 2793 WP_002224673.1 DNA polymerase I -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18683.41 Da        Isoelectric Point: 5.5451

>NTDB_id=349020 GJE04_RS08845 WP_002218101.1 1667475..1667981(+) (luxS) [Neisseria meningitidis strain AUSMDU00010537]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCIPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVGNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=349020 GJE04_RS08845 WP_002218101.1 1667475..1667981(+) (luxS) [Neisseria meningitidis strain AUSMDU00010537]
ATGCCCCTACTAGACAGTTTCAAAGTCGATCACACCCGTATGCATGCCCCCGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGACACCATTACCGTGTTCGACCTGCGCTTTTGCATTCCCAACAAAGAAATCCTGCCTGAAAAAGGCATAC
ACACGCTGGAGCATTTGTTCGCAGGTTTTATGCGCGACCACTTGAACGGCAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTCTACATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTCGCCGATGCATGGCTCGCCTC
GATGCAGGATGTGGGCAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTCGCCGAAGCGCAGCAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAACGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KW60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

76.647

99.405

0.762