Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EXY72_RS18980 Genome accession   NZ_CP036454
Coordinates   558221..559540 (-) Length   439 a.a.
NCBI ID   WP_038737839.1    Uniprot ID   -
Organism   Burkholderia pseudomallei strain BPs111     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 553221..564540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXY72_RS18960 (EXY72_18960) - 554120..554515 (-) 396 WP_004530943.1 nitrite reductase (NAD(P)H) small subunit -
  EXY72_RS18965 (EXY72_18965) nirB 554591..557035 (-) 2445 WP_131117433.1 nitrite reductase large subunit NirB -
  EXY72_RS18970 (EXY72_18970) - 557082..557423 (+) 342 WP_009918580.1 hypothetical protein -
  EXY72_RS18975 (EXY72_18975) maiA 557420..558064 (+) 645 WP_131117436.1 maleylacetoacetate isomerase -
  EXY72_RS18980 (EXY72_18980) pilA 558221..559540 (-) 1320 WP_038737839.1 signal recognition particle-docking protein FtsY Machinery gene
  EXY72_RS18985 (EXY72_18985) rsmD 559792..560418 (+) 627 WP_004522861.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  EXY72_RS18995 (EXY72_18995) coaD 560529..561029 (+) 501 WP_004195249.1 pantetheine-phosphate adenylyltransferase -
  EXY72_RS19000 (EXY72_19000) - 561092..561358 (+) 267 WP_004195247.1 YfhL family 4Fe-4S dicluster ferredoxin -
  EXY72_RS19005 (EXY72_19005) hisC 561527..562597 (-) 1071 WP_011204217.1 histidinol-phosphate transaminase -
  EXY72_RS19010 (EXY72_19010) pth 562686..563291 (-) 606 WP_004202941.1 aminoacyl-tRNA hydrolase -
  EXY72_RS19015 (EXY72_19015) - 563405..564019 (-) 615 WP_004200150.1 50S ribosomal protein L25/general stress protein Ctc -

Sequence

Protein


Download         Length: 439 a.a.        Molecular weight: 46293.58 Da        Isoelectric Point: 6.1951

>NTDB_id=348988 EXY72_RS18980 WP_038737839.1 558221..559540(-) (pilA) [Burkholderia pseudomallei strain BPs111]
MFSFFKRFKKAPDAAPAEPQQAPDAPRDASRAPASPDAARVDAPAAPQPRDEHSENHDRPEHDETPTAEHSRSGAQPAAR
ATPPASAAASEAPVGQPRAAAARASEPAPSVVMTVTPSSNGRHGVVETVEIVPPPAPEPAAKKSWIARLKSGLAKTSSSI
TNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQPL
VMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESGDPAAVIFDAVSAARARN
IDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGG
ILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADALLG

Nucleotide


Download         Length: 1320 bp        

>NTDB_id=348988 EXY72_RS18980 WP_038737839.1 558221..559540(-) (pilA) [Burkholderia pseudomallei strain BPs111]
ATGTTCAGTTTCTTCAAACGATTCAAGAAAGCGCCCGATGCCGCCCCGGCCGAGCCGCAGCAAGCGCCCGACGCGCCGCG
GGACGCTTCCCGCGCACCGGCATCGCCCGACGCCGCGCGAGTCGACGCGCCGGCCGCGCCGCAGCCGCGCGACGAGCACA
GCGAAAACCACGATCGCCCCGAGCACGACGAAACGCCGACCGCCGAGCATTCCCGTTCCGGCGCGCAGCCCGCCGCGCGC
GCGACGCCGCCCGCGTCCGCCGCCGCGTCGGAAGCGCCGGTCGGGCAGCCGCGCGCCGCCGCCGCGCGCGCAAGCGAGCC
CGCGCCGTCGGTCGTGATGACGGTCACGCCGTCGTCGAACGGCCGCCACGGCGTCGTCGAGACGGTCGAGATCGTGCCGC
CGCCCGCGCCCGAGCCGGCCGCGAAGAAATCGTGGATCGCGCGGCTGAAGTCCGGCCTCGCGAAGACGAGCTCGAGCATC
ACGAACGTATTCGTCAACACGAAAATCGACGACGCGCTCTACGAGGAGCTCGAGACGGCGCTGCTGATGTCCGACGCCGG
CATCGACGCGACCGAGCATCTGCTCGGCGCGCTGCGCGAAAAGGTGCGCGCGGGCCGCCTCACCGATCCGCAGCAGGTGA
AGGATGCGCTGCGCGGGCTGCTCGTCGAGCTGCTGGCGCCGCTCGAGAAGTCGCTCGTGCTCGGCCGCGCGCAGCCGCTC
GTGATGATGATCGCGGGCGTGAACGGCGCCGGCAAGACGACGAGCATCGGCAAGCTCGCGAAGCATCTGCAGAGCTTCGA
TCAATCGGTGCTGCTCGCCGCGGGCGACACGTTTCGCGCCGCCGCGCGCGAGCAGCTCGCGATCTGGGGCGAACGCAACA
ACGTGACCGTCGTCCAGCAGGAAAGCGGCGACCCCGCCGCGGTGATCTTCGATGCGGTCAGCGCCGCGCGCGCGCGCAAC
ATCGACGTGATGATGGCCGACACCGCAGGCCGCCTGCCGACGCAGCTGCATCTGATGGAAGAGCTCCGGAAGGTGAAGCG
CGTGATCGGCAAGGCGCACGACGGCGCGCCGCACGAGGTGCTGCTCGTGATCGACGCGAACACCGGCCAGAACGCGCTCG
CGCAGGTAAAGGCGTTCGACGACGCGCTCGGCCTCACGGGCCTCATCGTCACGAAGCTCGACGGCACCGCGAAGGGCGGC
ATCCTCGCCGCGATCGCGCGCCAGCGGCCGATTCCGGTGTACTTCATCGGCATCGGCGAGAAGGTCGAGGATCTGCAGCC
GTTCAGCGCGGAGGAATTCGCGGACGCGCTGCTCGGCTAG

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(240-439)

SRP54-type protein, helical bundle domain (SRP54_N)

(158-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.554

100

0.506

Multiple sequence alignment