Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   GJE04_RS02765 Genome accession   NZ_CP045961
Coordinates   516513..517511 (+) Length   332 a.a.
NCBI ID   WP_154074381.1    Uniprot ID   -
Organism   Neisseria meningitidis strain AUSMDU00010537     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 511513..522511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE04_RS02740 (GJE04_02740) - 511652..512161 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  GJE04_RS02745 (GJE04_02745) - 512733..513320 (-) 588 WP_154074380.1 superoxide dismutase -
  GJE04_RS02750 (GJE04_02750) dnaB 513483..514889 (+) 1407 WP_002213843.1 replicative DNA helicase -
  GJE04_RS02755 (GJE04_02755) pilH 515198..515866 (+) 669 WP_014575282.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GJE04_RS02760 (GJE04_02760) pilV 515896..516516 (+) 621 WP_154074400.1 type IV pilus modification protein PilV Regulator
  GJE04_RS02765 (GJE04_02765) pilJ 516513..517511 (+) 999 WP_154074381.1 PilW family protein Machinery gene
  GJE04_RS02770 (GJE04_02770) pilK 517490..518083 (+) 594 WP_002255851.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GJE04_RS02775 (GJE04_02775) pilX 518088..518561 (+) 474 WP_195183013.1 PilX family type IV pilin Machinery gene
  GJE04_RS02780 (GJE04_02780) - 519441..519869 (-) 429 Protein_511 AzlC family ABC transporter permease -
  GJE04_RS02785 (GJE04_02785) dut 520012..520464 (+) 453 WP_002250021.1 dUTP diphosphatase -
  GJE04_RS02790 (GJE04_02790) dapC 520540..521727 (+) 1188 WP_061727608.1 succinyldiaminopimelate transaminase -
  GJE04_RS12380 - 521815..521940 (+) 126 Protein_514 IS5/IS1182 family transposase -

Sequence


Protein


Download         Length: 332 a.a.        Molecular weight: 36564.45 Da        Isoelectric Point: 8.7174

>NTDB_id=348985 GJE04_RS02765 WP_154074381.1 516513..517511(+) (pilJ) [Neisseria meningitidis strain AUSMDU00010537]
MRRKMLNVPKGNYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLSAQQDLRNAATLIVRDARMAGGFG
CFNMSEHTKNDIIVDPSKQTQHVPVKPGAKQENPLFSLEWANTNNTNNNTAKLIPIAESTDIKYPGFAQARPALIFQYGI
DDLDASAETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLDDKGKWG
NPQLLAKKIRHMKVWYIYVSDCPEDDDAGKEETFRYTDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDAT
IRGGNVCANRTL

Nucleotide


Download         Length: 999 bp        

>NTDB_id=348985 GJE04_RS02765 WP_154074381.1 516513..517511(+) (pilJ) [Neisseria meningitidis strain AUSMDU00010537]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAATTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTTCCGCGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCAGGGGGCTTCGGT
TGTTTCAATATGTCCGAGCATACTAAAAATGATATTATTGTTGATCCAAGTAAGCAAACTCAACATGTCCCTGTAAAACC
CGGTGCCAAACAAGAAAATCCCCTTTTTTCTTTAGAGTGGGCTAATACTAATAATACTAATAATAATACAGCTAAATTGA
TTCCTATTGCTGAATCCACAGATATTAAATATCCGGGTTTTGCCCAGGCTCGTCCGGCATTGATTTTCCAATACGGCATC
GATGATCTTGATGCGAGTGCTGAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTAC
CTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAAAGGCATGTGG
TCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGT
AATCCTCAGTTGCTCGCGAAAAAGATTAGACATATGAAAGTGTGGTATATCTATGTTTCCGACTGTCCTGAAGATGACGA
TGCCGGCAAAGAGGAAACATTCAGATATACGGATAAATTCAACAGCGCCCAAGATGCTGTTACGCCCGCCGGGGTGGAGG
TTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATGCTTACCGTATCGATGCGACA
ATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

73.273

100

0.735