Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   GJE04_RS02775 Genome accession   NZ_CP045961
Coordinates   518088..518561 (+) Length   157 a.a.
NCBI ID   WP_195183013.1    Uniprot ID   -
Organism   Neisseria meningitidis strain AUSMDU00010537     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 513088..523561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE04_RS02750 (GJE04_02750) dnaB 513483..514889 (+) 1407 WP_002213843.1 replicative DNA helicase -
  GJE04_RS02755 (GJE04_02755) pilH 515198..515866 (+) 669 WP_014575282.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GJE04_RS02760 (GJE04_02760) pilV 515896..516516 (+) 621 WP_154074400.1 type IV pilus modification protein PilV Regulator
  GJE04_RS02765 (GJE04_02765) pilJ 516513..517511 (+) 999 WP_154074381.1 PilW family protein Machinery gene
  GJE04_RS02770 (GJE04_02770) pilK 517490..518083 (+) 594 WP_002255851.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GJE04_RS02775 (GJE04_02775) pilX 518088..518561 (+) 474 WP_195183013.1 PilX family type IV pilin Machinery gene
  GJE04_RS02780 (GJE04_02780) - 519441..519869 (-) 429 Protein_511 AzlC family ABC transporter permease -
  GJE04_RS02785 (GJE04_02785) dut 520012..520464 (+) 453 WP_002250021.1 dUTP diphosphatase -
  GJE04_RS02790 (GJE04_02790) dapC 520540..521727 (+) 1188 WP_061727608.1 succinyldiaminopimelate transaminase -
  GJE04_RS12380 - 521815..521940 (+) 126 Protein_514 IS5/IS1182 family transposase -
  GJE04_RS02795 (GJE04_02795) yaaA 521989..522768 (+) 780 WP_002235690.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17595.43 Da        Isoelectric Point: 9.7023

>NTDB_id=348987 GJE04_RS02775 WP_195183013.1 518088..518561(+) (pilX) [Neisseria meningitidis strain AUSMDU00010537]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDKEKSRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRDKASAEAYSETLFADAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=348987 GJE04_RS02775 WP_195183013.1 518088..518561(+) (pilX) [Neisseria meningitidis strain AUSMDU00010537]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATAAGGAAAAATCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCGGGGACGGGTTATACTCTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATAAGG
CTTCTGCCGAAGCCTATTCGGAGACCTTGTTCGCAGATGCCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

90.446

100

0.904
  pilL Neisseria gonorrhoeae MS11

89.172

100

0.892

Multiple sequence alignment