Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WN16_RS12055 Genome accession   NZ_CP036435
Coordinates   2497098..2497712 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter sp. ABFQG     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2492098..2502712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN16_RS12035 (WN16_12235) - 2492465..2494225 (-) 1761 WP_003035878.1 Lon protease family protein -
  WN16_RS12040 (WN16_12240) matP 2494411..2494863 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  WN16_RS12045 (WN16_12245) ompA 2494955..2496013 (-) 1059 WP_003836839.1 porin OmpA -
  WN16_RS12050 (WN16_12250) sulA 2496371..2496880 (-) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  WN16_RS12055 (WN16_12255) sxy/tfoX 2497098..2497712 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  WN16_RS12060 (WN16_12260) yccS 2497690..2499843 (-) 2154 WP_032941200.1 YccS family putative transporter -
  WN16_RS12065 (WN16_12265) - 2499862..2500308 (-) 447 WP_003035892.1 YccF domain-containing protein -
  WN16_RS12070 (WN16_12270) helD 2500434..2502488 (+) 2055 WP_044700756.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=348888 WN16_RS12055 WP_003035889.1 2497098..2497712(+) (sxy/tfoX) [Citrobacter sp. ABFQG]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=348888 WN16_RS12055 WP_003035889.1 2497098..2497712(+) (sxy/tfoX) [Citrobacter sp. ABFQG]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATTTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGCATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment