Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   GJE16_RS02695 Genome accession   NZ_CP045931
Coordinates   515544..515810 (+) Length   88 a.a.
NCBI ID   WP_001814186.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain AUSMDU00010538     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 510544..520810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE16_RS02675 (GJE16_02675) - 510759..511268 (+) 510 WP_000619941.1 GNAT family N-acetyltransferase -
  GJE16_RS02680 (GJE16_02680) pheT 511345..513747 (+) 2403 WP_000909141.1 phenylalanine--tRNA ligase subunit beta -
  GJE16_RS02685 (GJE16_02685) - 513815..514816 (-) 1002 WP_000597975.1 endonuclease/exonuclease/phosphatase family protein -
  GJE16_RS02690 (GJE16_02690) - 514972..515418 (+) 447 Protein_528 IS30 family transposase -
  GJE16_RS02695 (GJE16_02695) HI0659 515544..515810 (+) 267 WP_001814186.1 helix-turn-helix domain-containing protein Machinery gene
  GJE16_RS02700 (GJE16_02700) metE 516071..518320 (+) 2250 WP_000108220.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  GJE16_RS02705 (GJE16_02705) metF 518384..519250 (+) 867 WP_000089976.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9641.11 Da        Isoelectric Point: 4.2720

>NTDB_id=348801 GJE16_RS02695 WP_001814186.1 515544..515810(+) (HI0659) [Streptococcus pneumoniae strain AUSMDU00010538]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=348801 GJE16_RS02695 WP_001814186.1 515544..515810(+) (HI0659) [Streptococcus pneumoniae strain AUSMDU00010538]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489