Detailed information NTG0348794

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: GJE16_RS01905
• Genome accession: NZ_CP045931
• Coordinates: 357859..360225 (-)
• Length: 788 a.a.
• NCBI ID: WP_000454496.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain AUSMDU00010538
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 352859..365225

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GJE16_RS01865 (GJE16_01865)	vraR	353212..353844 (+)	633	WP_000698401.1	response regulator transcription factor	Regulator
GJE16_RS11215 (GJE16_01870)	-	353845..354086 (+)	242	Protein_366	DNA alkylation repair protein	-
GJE16_RS10925	-	354068..354613 (+)	546	Protein_367	DNA alkylation repair protein	-
GJE16_RS01885 (GJE16_01885)	-	354763..355002 (+)	240	WP_000754501.1	hypothetical protein	-
GJE16_RS01890 (GJE16_01890)	cbpG	355083..355673 (+)	591	Protein_369	choline-binding protein CbpG	-
GJE16_RS01895 (GJE16_01895)	-	356029..356334 (+)	306	WP_000889974.1	tyrosine-type recombinase/integrase	-
GJE16_RS01900 (GJE16_01900)	tig	356528..357811 (+)	1284	WP_000116465.1	trigger factor	-
GJE16_RS01905 (GJE16_01905)	recD/recD2/recDB	357859..360225 (-)	2367	WP_000454496.1	ATP-dependent RecD-like DNA helicase	Machinery gene
GJE16_RS01910 (GJE16_01910)	lepB	360353..360967 (-)	615	WP_001820908.1	signal peptidase I	-
GJE16_RS01915 (GJE16_01915)	rnhC	360971..361852 (-)	882	WP_000146853.1	ribonuclease HIII	-
GJE16_RS01920 (GJE16_01920)	zapA	361939..362241 (+)	303	WP_000002019.1	cell division protein ZapA	-
GJE16_RS01925 (GJE16_01925)	-	362238..362786 (+)	549	WP_000622953.1	CvpA family protein	-

Sequence

Protein

• Length: 788 a.a.
• Molecular weight: 88466.26 Da
• Isoelectric Point: 4.5618

>NTDB_id=348794 GJE16_RS01905 WP_000454496.1 357859..360225(-) (recD/recD2/recDB) [Streptococcus pneumoniae strain AUSMDU00010538]
MEVYFSGTIERIIFENPSNFYRILLLEIDDTDAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYDRA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDTYGENTIDEILQHPEKLEGIAGLSAKNREAFVSTLRLNYGTEMVLAKLANY
GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQACMETGDTYVEA
RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKGKQKSHDLKTIQKH
ITTIEQELGIEYDNIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDFRKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLHIPLIPQTRLEKIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRNGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPPQKDQLSFEAPQCHYRKGDKVIHLVNDAEINVFNGDLGAITDLIPGKYTESKQDEI
VIDFDGNEVSYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASRRMLERNLIYTAITRAKSKLILLGELQAFDYATQ
HIGTARKTYLIERFSDLLENVEEKQQAVSETVTSSASEQSYILTEENWDSIPAMIGITDTDLKEIFGK

Nucleotide

• Length: 2367 bp

>NTDB_id=348794 GJE16_RS01905 WP_000454496.1 357859..360225(-) (recD/recD2/recDB) [Streptococcus pneumoniae strain AUSMDU00010538]
ATGGAAGTTTATTTTTCAGGAACCATTGAACGGATTATTTTTGAAAATCCCAGCAATTTTTATCGCATCCTCCTCCTAGA
AATCGACGATACGGACGCAGAGGATTTTGATGACTTTGAAATCATTGTCACAGGAACCATGGCTGATGTAATTGAGGGCG
AAGACTATACTTTTTGGGGGCAAATTGTCCAGCACTCCAAGTATGGAGAACAACTGCAAATCAGTCGTTATGATCGCGCA
AAACCAACTAGTAAGGGCTTGGTCAAGTACTTTTCAAGTAGCCATTTCAAGGGGATTGGTCTCAAGACAGCTCAGAAAAT
CGTGGATACCTATGGCGAAAATACCATTGACGAAATTTTGCAACACCCAGAAAAGTTAGAAGGCATCGCAGGACTCTCTG
CCAAAAATCGCGAGGCTTTCGTCTCCACTCTCCGTCTCAACTACGGAACGGAGATGGTTTTGGCCAAACTAGCCAACTAC
GGCATTCCCAACAAACTAGCCTTTCAGATTCAAGACTTTTACAAGGAAGAAACCCTTGATGTGGTTGAAAATTATCCCTA
CCAGCTGGTTGAGGATATCAAGGGTTTGGGCTTTACCATTGCTGACCAACTAGCTGAGGAACTAGGCATCGAAAGTCAGG
CTCCTGAACGCTTCCGCGCCGGTCTAGTTCACAGTCTTTTTCAGGCCTGTATGGAAACAGGGGACACCTATGTTGAAGCA
CGGGATTTGCTGGAACAAACCCTTACTCTCCTTGAGTCTTCCCGTCCCGTGGAACTAGACCCCAGCCAAGTTGCCCAAGA
GCTCTCCTACCTGATCGAAGAAGACAAGGTTCAGCAGATTGATACCAAGATCTTTGACAACAGCCTCTTTTTCGCTGAGG
AAGGCATCCGCAGTCACTTGGTTCGTATCCTTGAAAAAGGAAAACAGAAGAGTCATGATTTAAAAACCATTCAAAAACAT
ATCACTACTATCGAGCAAGAGCTTGGAATTGAGTATGATAACATTCAAAAACAGGCTATCTGTGATGCTATCCAGAATAA
GGTCTTTATCCTGACAGGTGGACCTGGTACTGGTAAGACAACTGTTATCAATGGGATCATCGCTGTTTACGCCCTGTTAG
AGGGACTTGACTTCAGGAAGAAAAGCAACCTGCCCATTCTTCTTGCTGCTCCAACTGGTCGAGCTGCTCGTCGCATGAAT
GAATTGACAGGTTTGCCTAGCGCGACCATACACCGCCACTTGGGAATGACAGGTGACGATGATACCAGTCATCTGGAAGA
TTACCTAGATGCTGACTTTATCATCGTGGATGAATTCTCTATGGTGGATACTTGGCTGGCCAATCAACTCTTCTCCAATA
TCTCTTCTAACAGTAAGATCCTCATCGTAGGTGACAGTGATCAGCTACCTTCTGTCAGTCCTGGACAGGTTCTAGCGGAT
CTGCTTCATATTCCTTTGATTCCTCAGACTCGCTTGGAAAAAATTTATCGACAAAGCGAAGAATCAACCATCGTCACCCT
AGCTAGTCAGATTCGACAGGGCATCTTGCCAGCTGATTTCACCCAAAAAAAAGCTGACCGTTCCTACTTTGAAATTGCTA
GTGGCCATATTCCTGCCACCATTGAAAAAATCTTAGGTGCCGCCCTCAGAAATGGTATTCCTGCCCGTGATATCCAAGTT
CTGGCTCCTATGTACCGAGGGACGGCAGGGATTGATGCTATCAATCAGCTCATGCAAGACCTGCTCAATCCCCCACAAAA
AGATCAACTCAGTTTTGAAGCTCCTCAGTGCCACTATCGTAAGGGAGACAAGGTCATTCATTTGGTTAACGATGCTGAAA
TCAATGTCTTTAATGGGGATTTAGGAGCTATCACAGACCTGATTCCTGGTAAATACACCGAATCGAAACAAGACGAGATT
GTCATTGATTTTGATGGTAATGAAGTCTCTTACCCCCGTAACGAATGGTACAAGATTCGCTTGGCCTATGCCATGAGTAT
TCATAAGTCTCAGGGAAGTGAGTTCCCAGTTGTCATCCTACCGATTACTAGTGCTAGCCGACGTATGCTGGAGCGAAATC
TCATCTACACAGCCATTACACGTGCCAAAAGCAAACTCATCTTACTAGGCGAATTACAAGCCTTCGACTATGCTACCCAA
CACATCGGAACTGCCCGAAAAACCTATCTGATTGAACGCTTCAGTGATCTACTGGAGAATGTTGAAGAAAAGCAACAAGC
TGTCTCTGAAACAGTCACATCAAGTGCCTCTGAACAATCCTACATCCTAACCGAAGAAAACTGGGACAGCATTCCAGCCA
TGATTGGGATTACAGACACAGACCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (662-709)

• Helix-hairpin-helix containing domain (HHH_RecD2) (148-237)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (574-644)

• AAA domain (AAA_30) (332-520)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	40.625	97.462	0.396