Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GJE16_RS01765 Genome accession   NZ_CP045931
Coordinates   334782..335378 (-) Length   198 a.a.
NCBI ID   WP_000248787.1    Uniprot ID   H8ZYP5
Organism   Streptococcus pneumoniae strain AUSMDU00010538     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 329782..340378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE16_RS01760 (GJE16_01760) pbp1a 332626..334785 (-) 2160 WP_001039998.1 penicillin-binding protein PBP1A -
  GJE16_RS01765 (GJE16_01765) recU 334782..335378 (-) 597 WP_000248787.1 Holliday junction resolvase RecU Machinery gene
  GJE16_RS01770 (GJE16_01770) - 335444..335971 (+) 528 WP_000179553.1 DUF1273 domain-containing protein -
  GJE16_RS01775 (GJE16_01775) gpsB 336041..336370 (+) 330 WP_000146522.1 cell division regulator GpsB -
  GJE16_RS01785 (GJE16_01785) - 336856..338013 (+) 1158 WP_050230812.1 class I SAM-dependent RNA methyltransferase -
  GJE16_RS01790 (GJE16_01790) mapZ 338026..339396 (+) 1371 WP_000039301.1 mid-cell-anchored protein MapZ -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23130.53 Da        Isoelectric Point: 9.8515

>NTDB_id=348791 GJE16_RS01765 WP_000248787.1 334782..335378(-) (recU) [Streptococcus pneumoniae strain AUSMDU00010538]
MVNYPHKVSSQKRQTSLSQPKNFANRGMSFEKMINATNDYYLSQGLAVIHKKPTPIQIVQVDYPQRSRAKIVEAYFRQAS
TTDYSGVYNGYYIDFEVKETKQKRAIPMKNFHPHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAFDLIRFYHQDKGQK
SMPLEYIREYGYEIKAGAFPQIPYLNVIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=348791 GJE16_RS01765 WP_000248787.1 334782..335378(-) (recU) [Streptococcus pneumoniae strain AUSMDU00010538]
ATGGTCAACTATCCACATAAAGTTTCATCACAAAAAAGACAAACATCTCTTTCTCAACCCAAAAATTTCGCAAATCGAGG
AATGTCTTTTGAAAAGATGATCAATGCTACCAACGACTACTATTTGTCTCAGGGCTTGGCTGTTATACATAAGAAACCAA
CTCCTATTCAAATCGTACAAGTGGACTATCCACAACGAAGTCGTGCCAAGATTGTTGAAGCCTATTTTCGACAAGCTTCA
ACGACGGACTATTCTGGCGTTTATAATGGATATTACATCGACTTTGAAGTCAAGGAAACAAAACAAAAACGTGCGATTCC
GATGAAAAATTTTCATCCACATCAGATTCAGCATATGGAACAAGTCCTTGCCCAACAAGGAATCTGCTTTGTCCTTCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTGCCGGCATTCGATTTGATTCGCTTCTATCATCAAGATAAGGGACAAAAA
TCAATGCCACTTGAATATATTCGAGAATATGGATATGAAATCAAGGCTGGTGCCTTCCCTCAAATTCCTTATCTCAATGT
TATCAAAGAACATTTATTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8ZYP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.49