Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GJE16_RS00255 Genome accession   NZ_CP045931
Coordinates   43820..44590 (+) Length   256 a.a.
NCBI ID   WP_000616161.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain AUSMDU00010538     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 38820..49590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE16_RS00240 (GJE16_00240) - 40280..40717 (+) 438 WP_000076479.1 CoA-binding protein -
  GJE16_RS00245 (GJE16_00245) - 41495..42505 (-) 1011 WP_000009143.1 YeiH family protein -
  GJE16_RS00250 (GJE16_00250) - 42654..43823 (+) 1170 WP_000366378.1 pyridoxal phosphate-dependent aminotransferase -
  GJE16_RS00255 (GJE16_00255) recO 43820..44590 (+) 771 WP_000616161.1 DNA repair protein RecO Machinery gene
  GJE16_RS00260 (GJE16_00260) plsX 44587..45579 (+) 993 WP_000717458.1 phosphate acyltransferase PlsX -
  GJE16_RS00265 (GJE16_00265) - 45585..45818 (+) 234 WP_000136447.1 acyl carrier protein -
  GJE16_RS00270 (GJE16_00270) - 45855..46154 (+) 300 Protein_47 transposase family protein -
  GJE16_RS00275 (GJE16_00275) blpU 46357..46587 (+) 231 WP_001093487.1 bacteriocin-like peptide BlpU -
  GJE16_RS11195 - 46590..46715 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  GJE16_RS10835 - 47126..47320 (+) 195 WP_000756776.1 hypothetical protein -
  GJE16_RS10845 (GJE16_00280) - 47341..48234 (+) 894 Protein_51 helix-turn-helix domain-containing protein -
  GJE16_RS00285 (GJE16_00285) - 48765..49061 (+) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29774.26 Da        Isoelectric Point: 5.3573

>NTDB_id=348781 GJE16_RS00255 WP_000616161.1 43820..44590(+) (recO) [Streptococcus pneumoniae strain AUSMDU00010538]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDDRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=348781 GJE16_RS00255 WP_000616161.1 43820..44590(+) (recO) [Streptococcus pneumoniae strain AUSMDU00010538]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGTCTCTGTCCAGAGCATTATCATGAGGATGATAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992

Multiple sequence alignment