Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   JDM1_RS09265 Genome accession   NC_012984
Coordinates   1973723..1975534 (-) Length   603 a.a.
NCBI ID   WP_011101688.1    Uniprot ID   A0A0L7Y818
Organism   Lactiplantibacillus plantarum JDM1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1968723..1980534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDM1_RS09240 (JDM1_1857) - 1969327..1969965 (+) 639 WP_003644620.1 copper homeostasis protein CutC -
  JDM1_RS09245 (JDM1_1858) - 1970219..1971121 (-) 903 WP_015825713.1 RluA family pseudouridine synthase -
  JDM1_RS09250 (JDM1_1859) - 1971118..1971921 (-) 804 WP_003640878.1 NAD kinase -
  JDM1_RS09255 (JDM1_1860) - 1971918..1972580 (-) 663 WP_003640879.1 GTP pyrophosphokinase family protein -
  JDM1_RS09260 (JDM1_1861) - 1972873..1973508 (+) 636 WP_003640880.1 DsbA family protein -
  JDM1_RS09265 (JDM1_1862) pepF 1973723..1975534 (-) 1812 WP_011101688.1 oligoendopeptidase F Regulator
  JDM1_RS09270 (JDM1_1863) - 1975612..1976697 (-) 1086 WP_015825714.1 competence protein CoiA -
  JDM1_RS09275 (JDM1_1864) - 1976882..1977613 (-) 732 WP_003640883.1 adaptor protein MecA -
  JDM1_RS09280 (JDM1_1865) spxA 1977749..1978147 (-) 399 WP_011101690.1 transcriptional regulator SpxA -
  JDM1_RS09285 (JDM1_1866) - 1978434..1979177 (-) 744 WP_003644623.1 MBL fold metallo-hydrolase -
  JDM1_RS09290 (JDM1_1867) - 1979318..1979818 (+) 501 WP_003640886.1 antibiotic biosynthesis monooxygenase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 67707.73 Da        Isoelectric Point: 4.8348

>NTDB_id=34878 JDM1_RS09265 WP_011101688.1 1973723..1975534(-) (pepF) [Lactiplantibacillus plantarum JDM1]
MVATKQLPTRSAVPEELTWDLTPIYADQAAYEADIAQVKAAIPTVTALKETFTSSADTVLAGIQAVLALYRRLEKVAVYA
SLKSDQDTGNSTNAALDDQASSLTAKVSAATAWFEPAILELTPGELDTYLDENVDLRDYRHLLDTIRLQKGHVLSESEEA
LLAGASDIFGASAKTFGVLNNADFQFPTVKDDDGNPVKLSQGIYGVLLESVHPAVRREAFEALYKVYGQFRRTLASTLAS
QVKVHNFVAQAHHYPDARTAALAANQIPTAVYDSLVTSVDKHLDLLHRYVALRKQLLGVDQLHMYDMYTPLAPKPTTNYS
YQQAQATALQALKILGPDYLKHVKTAFASRWIDVVENQGKRSGAYSSGMYDTAPYMLLNWQDNIDNLYTLVHEMGHSMHS
YFTTHHQPYQYGDYSIFVAEIASTTNENLLTNYFLATEQDPKMRAYVLNYYLDGFKGTVFRQTQFAEFEQWLHEQDQEGQ
ALTADRLSKHYLQLNQRYYGDAVVSDPQIADEWSRIPHFYYNYYVYQYATGFAAASTLADRISTQQTDAVADYLGYLKAG
SSAFPIDVMHRAGVDMTKPDYLDAAFEVFEERLNEFEQLVTQD

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=34878 JDM1_RS09265 WP_011101688.1 1973723..1975534(-) (pepF) [Lactiplantibacillus plantarum JDM1]
ATGGTAGCAACCAAACAATTACCGACCCGTTCGGCCGTTCCTGAAGAACTGACGTGGGATTTGACGCCCATTTATGCAGA
TCAGGCCGCGTATGAGGCGGATATTGCACAAGTCAAAGCTGCAATCCCCACCGTCACTGCGCTTAAAGAAACGTTTACAA
GCTCGGCCGACACGGTGCTGGCTGGCATCCAGGCTGTTTTAGCGCTGTATCGTCGGTTAGAGAAAGTGGCGGTATACGCA
AGTCTGAAAAGTGACCAGGATACTGGCAATAGTACCAATGCGGCTTTAGACGATCAAGCTAGTAGTTTGACTGCCAAGGT
ATCCGCAGCGACTGCCTGGTTCGAACCAGCAATCTTGGAATTAACGCCGGGCGAATTGGATACGTACCTTGATGAAAACG
TCGATTTACGTGATTATCGGCATTTGTTGGATACGATCCGGTTGCAAAAGGGACACGTTCTGTCTGAAAGCGAAGAAGCT
TTACTCGCAGGCGCTAGTGATATTTTTGGTGCTTCTGCGAAAACTTTTGGTGTACTGAATAACGCTGACTTTCAATTTCC
AACGGTAAAGGATGACGACGGCAACCCTGTCAAATTGTCACAAGGAATTTATGGGGTGTTACTTGAGTCCGTTCATCCGG
CTGTTCGGCGAGAGGCGTTTGAAGCACTGTATAAAGTATACGGCCAGTTCCGGCGAACACTTGCTTCGACTTTAGCTAGC
CAAGTCAAGGTACACAATTTTGTTGCCCAGGCTCATCATTATCCAGATGCGCGGACGGCAGCACTTGCTGCCAATCAGAT
TCCGACGGCGGTTTACGATTCTTTAGTCACGTCCGTTGACAAGCATTTGGACTTATTGCACCGGTATGTTGCGTTACGGA
AACAACTGCTCGGAGTTGATCAGTTGCATATGTATGATATGTACACGCCATTGGCACCCAAGCCGACGACCAACTATTCC
TACCAGCAGGCTCAAGCAACTGCTTTACAAGCGCTCAAAATTTTGGGTCCTGATTATCTCAAACACGTCAAAACAGCGTT
TGCTTCACGGTGGATTGATGTGGTGGAAAATCAAGGCAAACGTAGCGGGGCGTATTCGTCAGGAATGTATGATACCGCGC
CATACATGCTGTTGAACTGGCAGGATAATATTGATAATTTATATACGTTGGTGCACGAAATGGGACACAGTATGCACTCT
TACTTCACGACACATCATCAGCCATATCAGTATGGTGACTATTCAATTTTCGTGGCGGAAATTGCTTCAACGACTAATGA
AAACTTGTTGACGAACTATTTCTTAGCGACTGAACAAGATCCAAAAATGCGGGCGTATGTCTTGAATTACTACTTAGATG
GATTTAAAGGCACCGTTTTCCGGCAGACGCAATTTGCTGAGTTTGAACAGTGGCTTCATGAGCAAGATCAAGAAGGTCAG
GCTTTGACTGCCGATCGCTTGTCAAAACATTATTTGCAGTTGAACCAACGCTACTATGGTGACGCCGTCGTCAGTGATCC
ACAAATTGCTGACGAATGGTCCCGTATCCCGCATTTTTATTACAATTATTATGTTTATCAGTATGCCACGGGTTTTGCAG
CGGCCTCAACGTTGGCTGACCGTATTAGTACGCAACAGACAGATGCTGTTGCGGATTATCTCGGTTACTTGAAAGCTGGT
TCATCTGCTTTCCCAATCGATGTCATGCACCGAGCTGGAGTTGATATGACCAAGCCTGATTATCTTGATGCAGCTTTCGA
GGTATTTGAAGAACGATTAAATGAATTTGAACAGTTGGTCACCCAAGATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L7Y818

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.515

98.507

0.507

Multiple sequence alignment