Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   EYC09_RS04685 Genome accession   NZ_CP036399
Coordinates   976001..976963 (-) Length   320 a.a.
NCBI ID   WP_001987609.1    Uniprot ID   -
Organism   Helicobacter pylori strain 8A3     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 971001..981963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC09_RS04660 - 971138..971275 (+) 138 WP_167549018.1 hypothetical protein -
  EYC09_RS04665 - 971310..972242 (-) 933 WP_001002436.1 GDP-L-fucose synthase -
  EYC09_RS04670 gmd 972235..973380 (-) 1146 WP_000659886.1 GDP-mannose 4,6-dehydratase -
  EYC09_RS04675 - 973404..974807 (-) 1404 WP_000694860.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  EYC09_RS04680 comB10 974872..976008 (-) 1137 WP_001045899.1 DNA type IV secretion system protein ComB10 Machinery gene
  EYC09_RS04685 comB9 976001..976963 (-) 963 WP_001987609.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  EYC09_RS04690 comB8 976963..977706 (-) 744 WP_000660543.1 virB8 family protein Machinery gene
  EYC09_RS04695 comB7 977703..977828 (-) 126 WP_001217874.1 hypothetical protein Machinery gene
  EYC09_RS04700 comB6 977844..978899 (-) 1056 WP_000786643.1 P-type conjugative transfer protein TrbL Machinery gene
  EYC09_RS04705 - 978905..979900 (-) 996 WP_000468812.1 PDZ domain-containing protein -
  EYC09_RS04710 - 979900..980193 (-) 294 WP_000347922.1 YbaB/EbfC family nucleoid-associated protein -
  EYC09_RS04715 panD 980204..980554 (-) 351 WP_000142212.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 36795.34 Da        Isoelectric Point: 9.5584

>NTDB_id=348758 EYC09_RS04685 WP_001987609.1 976001..976963(-) (comB9) [Helicobacter pylori strain 8A3]
MRKVLYALMGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENTPTNNKPLKEEKEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPKEIFNDKQFTYFKFDKKLALSKFPVVYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRSGKDYLCIRFIKKGKDE

Nucleotide


Download         Length: 963 bp        

>NTDB_id=348758 EYC09_RS04685 WP_001987609.1 976001..976963(-) (comB9) [Helicobacter pylori strain 8A3]
ATGCGTAAGGTTTTATACGCTCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCAAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTAAACATTGATTACTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAATACCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAGCACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGGTTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTAGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATCGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

94.479

100

0.963

Multiple sequence alignment