Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   O3Y_RS09435 Genome accession   NC_016944
Coordinates   2032266..2032880 (-) Length   204 a.a.
NCBI ID   WP_000580359.1    Uniprot ID   Q9KR01
Organism   Vibrio cholerae IEC224     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2027266..2037880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O3Y_RS09410 (O3Y_08920) ybgE 2027577..2027894 (-) 318 WP_001286617.1 cyd operon protein YbgE -
  O3Y_RS09415 (O3Y_08925) cydX 2027887..2027994 (-) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  O3Y_RS09420 (O3Y_08930) cydB 2028007..2029143 (-) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  O3Y_RS09425 (O3Y_08935) cydA 2029161..2030747 (-) 1587 WP_000568056.1 cytochrome ubiquinol oxidase subunit I -
  O3Y_RS09430 (O3Y_08940) ruvB 2031206..2032210 (-) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  O3Y_RS09435 (O3Y_08945) ruvA 2032266..2032880 (-) 615 WP_000580359.1 Holliday junction branch migration protein RuvA Machinery gene
  O3Y_RS09440 (O3Y_08950) ruvC 2032977..2033498 (-) 522 WP_000111361.1 crossover junction endodeoxyribonuclease RuvC -
  O3Y_RS09445 (O3Y_08955) cysS 2033586..2034965 (-) 1380 WP_000913180.1 cysteine--tRNA ligase -
  O3Y_RS09450 (O3Y_08960) - 2035111..2035605 (+) 495 WP_000631301.1 peptidylprolyl isomerase -
  O3Y_RS09455 (O3Y_08965) lpxH 2035646..2036386 (+) 741 WP_000557000.1 UDP-2,3-diacylglucosamine diphosphatase -
  O3Y_RS09460 (O3Y_08970) - 2036482..2037696 (+) 1215 WP_001881603.1 EAL and HDOD domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22008.70 Da        Isoelectric Point: 5.0954

>NTDB_id=34865 O3Y_RS09435 WP_000580359.1 2032266..2032880(-) (ruvA) [Vibrio cholerae IEC224]
MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVSERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=34865 O3Y_RS09435 WP_000580359.1 2032266..2032880(-) (ruvA) [Vibrio cholerae IEC224]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAGTTACCTCCTCAAATTTTGATTGAGGTCGGTGGTATTGGCTATGA
AGTGCAAATGCCGATGAGCTGTATTTATGAACTGCCGAATATTGGGGAAGAAGCCATCATTTATACCCACTTTGTAGTTC
GAGAAGATGCACAGCTACTTTATGGCTTTAATACCGTTAGCGAACGCGCTCTGTTTCGTGAAGTAATCAAAGCCAATGGC
GTAGGGCCGAAAATGGGGCTTGCGATCCTCTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGACCTCTTTACACCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATTCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363