Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HELPY_RS07025 Genome accession   NC_012973
Coordinates   1429413..1429988 (-) Length   191 a.a.
NCBI ID   WP_001203556.1    Uniprot ID   -
Organism   Helicobacter pylori B38     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1424413..1434988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HELPY_RS08665 (HELPY_1443) - 1426083..1426640 (-) 558 WP_041200484.1 restriction endonuclease subunit S -
  HELPY_RS08670 (HELPY_1444) - 1426667..1427344 (-) 678 WP_000580126.1 restriction endonuclease subunit S -
  HELPY_RS07020 (HELPY_1445) - 1427341..1429380 (-) 2040 WP_001147686.1 class I SAM-dependent DNA methyltransferase -
  HELPY_RS07025 (HELPY_1446) comFC 1429413..1429988 (-) 576 WP_001203556.1 ComF family protein Machinery gene
  HELPY_RS07030 (HELPY_1447) tmk 1429976..1430551 (-) 576 WP_000289706.1 dTMP kinase -
  HELPY_RS07035 (HELPY_1448) coaD 1430553..1431026 (-) 474 WP_001169275.1 pantetheine-phosphate adenylyltransferase -
  HELPY_RS07040 (HELPY_1449) - 1431026..1431589 (-) 564 WP_000780109.1 UbiX family flavin prenyltransferase -
  HELPY_RS07045 (HELPY_1450) flgA 1431599..1432255 (-) 657 WP_000699075.1 flagellar basal body P-ring formation chaperone FlgA -
  HELPY_RS07050 (HELPY_1451) uvrD 1432252..1434297 (-) 2046 WP_000505288.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21277.83 Da        Isoelectric Point: 8.9024

>NTDB_id=34849 HELPY_RS07025 WP_001203556.1 1429413..1429988(-) (comFC) [Helicobacter pylori B38]
MRCLTCLKLSFKPLCPNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=34849 HELPY_RS07025 WP_001203556.1 1429413..1429988(-) (comFC) [Helicobacter pylori B38]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTAAGGATTTTACAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCGGGGAAAAGCTTGG
AATTTCGCGCCAATAACCCACGGGATTTCACTTTCAAGGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

95.812

100

0.958

Multiple sequence alignment