Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HELPY_RS06570 Genome accession   NC_012973
Coordinates   1331702..1333015 (-) Length   437 a.a.
NCBI ID   WP_000653597.1    Uniprot ID   -
Organism   Helicobacter pylori B38     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1326702..1338015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HELPY_RS06540 (HELPY_1345) nadC 1327167..1327988 (-) 822 WP_000404084.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HELPY_RS06545 (HELPY_1346) nadA 1327988..1328998 (-) 1011 WP_001141838.1 quinolinate synthase NadA -
  HELPY_RS06550 (HELPY_1347) - 1328988..1329791 (-) 804 WP_000226227.1 phosphatidylserine decarboxylase -
  HELPY_RS06555 (HELPY_1348) - 1329785..1330291 (-) 507 WP_000953098.1 DUF6115 domain-containing protein -
  HELPY_RS06560 (HELPY_1349) - 1330304..1330798 (-) 495 WP_015829030.1 hypothetical protein -
  HELPY_RS06565 (HELPY_1350) mqnP 1330791..1331675 (-) 885 WP_000913881.1 menaquinone biosynthesis prenyltransferase MqnP -
  HELPY_RS06570 (HELPY_1351) comEC/comE3 1331702..1333015 (-) 1314 WP_000653597.1 ComEC/Rec2 family competence protein Machinery gene
  HELPY_RS06575 (HELPY_1352) - 1333012..1334472 (-) 1461 WP_000349757.1 replicative DNA helicase -
  HELPY_RS06580 (HELPY_1353) - 1334483..1335883 (-) 1401 WP_000953990.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HELPY_RS06585 (HELPY_1354) crdS 1335886..1337088 (-) 1203 WP_079996188.1 copper-sensing histidine kinase CrdS -
  HELPY_RS06590 (HELPY_1355) crdR 1337054..1337695 (-) 642 WP_001169759.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 49970.79 Da        Isoelectric Point: 9.8594

>NTDB_id=34847 HELPY_RS06570 WP_000653597.1 1331702..1333015(-) (comEC/comE3) [Helicobacter pylori B38]
MKDKTFQGAFELLSTPKEYLWCGVVLSLLLAINLYLEYLNYQKLDFSKPTSLSAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGRIKSCSFLESLKSCFFQTYSFSLTRKQDFKSHLRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQAISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRLLSMPLTISTISIPSPLWLLGVHLCLT
ILSVRSFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=34847 HELPY_RS06570 WP_000653597.1 1331702..1333015(-) (comEC/comE3) [Helicobacter pylori B38]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAGCG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAGGATCAAATCTTGTTC
GTTCTTAGAGTCTTTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGAGCGTTATTTATAGGGGATAGCTTG
AATAAGGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAAGCCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTATCGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCGGTGGGTTTGGGGTCTTTGTTGGATCGCC
TTTTAAGCATGCCTTTAACAATCTCCACGATTTCAATCCCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATGTTTAACG
ATTCTAAGCGTGCGTTCTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.423

100

0.954

Multiple sequence alignment