Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   GIY05_RS10320 Genome accession   NZ_CP045916
Coordinates   2188290..2188646 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain CF39S     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2183290..2193646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIY05_RS10295 fabF 2183502..2184746 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  GIY05_RS10300 pabC 2184746..2185561 (+) 816 WP_003104130.1 aminodeoxychorismate lyase -
  GIY05_RS10305 mltG 2185567..2186616 (+) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  GIY05_RS10310 tmk 2186645..2187277 (+) 633 WP_003091125.1 dTMP kinase -
  GIY05_RS10315 - 2187270..2188256 (+) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  GIY05_RS10320 pilZ 2188290..2188646 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  GIY05_RS10325 - 2188661..2189437 (+) 777 WP_003091117.1 TatD family hydrolase -
  GIY05_RS10330 - 2189663..2190796 (-) 1134 WP_003104119.1 aminotransferase class V-fold PLP-dependent enzyme -
  GIY05_RS10335 - 2190882..2191520 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  GIY05_RS10340 - 2191670..2191792 (+) 123 Protein_2042 radical SAM protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=348456 GIY05_RS10320 WP_003091119.1 2188290..2188646(+) (pilZ) [Pseudomonas aeruginosa strain CF39S]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=348456 GIY05_RS10320 WP_003091119.1 2188290..2188646(+) (pilZ) [Pseudomonas aeruginosa strain CF39S]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCTGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449

Multiple sequence alignment