Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   GIY05_RS10080 Genome accession   NZ_CP045916
Coordinates   2139850..2140464 (-) Length   204 a.a.
NCBI ID   WP_004353652.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CF39S     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2134850..2145464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIY05_RS10055 - 2135307..2135570 (+) 264 WP_003109484.1 DUF1653 domain-containing protein -
  GIY05_RS10060 topA 2135661..2138267 (+) 2607 WP_003091201.1 type I DNA topoisomerase -
  GIY05_RS10065 - 2138374..2138892 (+) 519 WP_003113979.1 DUF6586 family protein -
  GIY05_RS10070 - 2139098..2139331 (+) 234 WP_003109483.1 hypothetical protein -
  GIY05_RS10075 sulA 2139353..2139838 (-) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  GIY05_RS10080 dinR/lexA 2139850..2140464 (-) 615 WP_004353652.1 transcriptional repressor LexA Regulator
  GIY05_RS10085 psrA 2140696..2141397 (+) 702 WP_003091195.1 transcriptional regulator PsrA -
  GIY05_RS10090 nagZ 2141599..2142597 (+) 999 WP_003118092.1 beta-N-acetylhexosaminidase -
  GIY05_RS10095 - 2142609..2143346 (+) 738 WP_003091193.1 S-methyl-5'-thioinosine phosphorylase -
  GIY05_RS10100 - 2143392..2144021 (-) 630 WP_003091190.1 CsiV family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22481.97 Da        Isoelectric Point: 6.2719

>NTDB_id=348453 GIY05_RS10080 WP_004353652.1 2139850..2140464(-) (dinR/lexA) [Pseudomonas aeruginosa strain CF39S]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPLAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=348453 GIY05_RS10080 WP_004353652.1 2139850..2140464(-) (dinR/lexA) [Pseudomonas aeruginosa strain CF39S]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCTTGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGTATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(83-196)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387