Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GIY05_RS08415 Genome accession   NZ_CP045916
Coordinates   1786303..1786908 (+) Length   201 a.a.
NCBI ID   WP_003091706.1    Uniprot ID   A0A0H2ZDR8
Organism   Pseudomonas aeruginosa strain CF39S     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1781303..1791908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIY05_RS08415 clpP 1786303..1786908 (+) 606 WP_003091706.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GIY05_RS08420 - 1787251..1788138 (-) 888 WP_003102091.1 metal-dependent hydrolase -
  GIY05_RS08425 - 1788148..1789926 (-) 1779 WP_003102094.1 SDR family oxidoreductase -
  GIY05_RS08430 - 1789923..1790798 (-) 876 WP_003091703.1 M24 family metallopeptidase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22142.22 Da        Isoelectric Point: 5.3571

>NTDB_id=348446 GIY05_RS08415 WP_003091706.1 1786303..1786908(+) (clpP) [Pseudomonas aeruginosa strain CF39S]
MKTDDKDREGGDSHGAIGAKLMEYALKVRKVFVTGGVDEKMAKDVVQQLHILASISDDPIYMFVNSPGGHVESGDMIFDA
IRFITPKVIMIGSGSVASAGALIYAAADKENRYSLPNTRFLLHQPSGGIQGPASNIEIYRREIVRMKERLDRIFAEATGQ
TPEKISADTERDFWLNAEEAVQYGLVNKIIVSEREITLPGQ

Nucleotide


Download         Length: 606 bp        

>NTDB_id=348446 GIY05_RS08415 WP_003091706.1 1786303..1786908(+) (clpP) [Pseudomonas aeruginosa strain CF39S]
ATGAAAACCGATGACAAGGACCGCGAAGGCGGCGACTCCCACGGCGCCATCGGCGCCAAGCTGATGGAGTACGCGCTCAA
GGTCAGGAAGGTGTTCGTCACCGGCGGGGTCGACGAGAAGATGGCCAAGGACGTCGTCCAGCAGCTGCACATCCTCGCCT
CGATCAGCGACGATCCGATCTACATGTTCGTCAATTCCCCGGGTGGCCACGTCGAATCCGGCGACATGATCTTCGACGCG
ATCCGCTTCATCACACCGAAGGTCATCATGATCGGTTCCGGCAGCGTTGCCAGCGCCGGCGCGCTGATCTATGCCGCGGC
GGACAAGGAAAACCGCTATTCGCTGCCCAATACCCGCTTCCTCCTGCACCAGCCGTCGGGCGGCATACAGGGGCCGGCCA
GCAATATCGAGATCTACCGCCGCGAGATCGTGCGGATGAAGGAACGCCTCGACCGGATCTTCGCCGAAGCCACCGGGCAG
ACGCCGGAAAAGATCAGCGCCGACACCGAGCGCGACTTCTGGCTGAACGCGGAGGAGGCCGTGCAGTACGGCCTGGTCAA
CAAGATCATCGTTTCGGAACGGGAGATCACGCTGCCTGGCCAGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(19-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

43.195

84.08

0.363

Multiple sequence alignment