Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   EYC27_RS04685 Genome accession   NZ_CP036381
Coordinates   976977..977720 (-) Length   247 a.a.
NCBI ID   WP_000660543.1    Uniprot ID   -
Organism   Helicobacter pylori strain 125A3     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 971977..982720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC27_RS04665 gmd 972249..973394 (-) 1146 WP_000659886.1 GDP-mannose 4,6-dehydratase -
  EYC27_RS04670 - 973418..974821 (-) 1404 WP_000694860.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  EYC27_RS04675 comB10 974886..976022 (-) 1137 WP_001045899.1 DNA type IV secretion system protein ComB10 Machinery gene
  EYC27_RS04680 comB9 976015..976977 (-) 963 WP_001987609.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  EYC27_RS04685 comB8 976977..977720 (-) 744 WP_000660543.1 virB8 family protein Machinery gene
  EYC27_RS04690 comB7 977717..977842 (-) 126 WP_001217874.1 hypothetical protein Machinery gene
  EYC27_RS04695 comB6 977858..978913 (-) 1056 WP_000786643.1 P-type conjugative transfer protein TrbL Machinery gene
  EYC27_RS04700 - 978919..979914 (-) 996 WP_000468812.1 PDZ domain-containing protein -
  EYC27_RS04705 - 979914..980207 (-) 294 WP_000347922.1 YbaB/EbfC family nucleoid-associated protein -
  EYC27_RS04710 panD 980218..980568 (-) 351 WP_000142212.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28666.89 Da        Isoelectric Point: 8.3165

>NTDB_id=348399 EYC27_RS04685 WP_000660543.1 976977..977720(-) (comB8) [Helicobacter pylori strain 125A3]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINHIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=348399 EYC27_RS04685 WP_000660543.1 976977..977720(-) (comB8) [Helicobacter pylori strain 125A3]
ATGAAGGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAGTGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCGATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGAGCGTATGTGTTAAACCGGGAGAGTATTAACCACATTGACGATAAATCGCGCT
ATGAATTGGTGCGCCTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAACGCAAAACAGCATTTAT
GTGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCTATTGCGAGCGT
TTCTATTGCAGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976

Multiple sequence alignment