Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   EYC28_RS05365 Genome accession   NZ_CP036380
Coordinates   1125839..1126243 (-) Length   134 a.a.
NCBI ID   WP_000599206.1    Uniprot ID   -
Organism   Helicobacter pylori strain 125C7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1120839..1131243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC28_RS05325 - 1120927..1122018 (-) 1092 WP_000426610.1 hypothetical protein -
  EYC28_RS05330 - 1122008..1122793 (-) 786 WP_000488071.1 hypothetical protein -
  EYC28_RS05335 - 1122793..1123179 (-) 387 WP_000397472.1 DUF1294 domain-containing protein -
  EYC28_RS07570 - 1123182..1123379 (+) 198 WP_001116510.1 hypothetical protein -
  EYC28_RS05340 - 1123518..1123784 (-) 267 WP_001987464.1 hypothetical protein -
  EYC28_RS05345 - 1123868..1124206 (-) 339 WP_033587433.1 glycoside hydrolase family protein -
  EYC28_RS05350 - 1124217..1124777 (-) 561 WP_000037133.1 hypothetical protein -
  EYC28_RS05355 - 1124761..1125099 (-) 339 WP_000699920.1 hypothetical protein -
  EYC28_RS05360 - 1125230..1125781 (-) 552 WP_000892207.1 tetratricopeptide repeat protein -
  EYC28_RS05365 dprB 1125839..1126243 (-) 405 WP_000599206.1 Holliday junction resolvase RuvX Machinery gene
  EYC28_RS05370 dprA 1126240..1127040 (-) 801 WP_000841124.1 DNA-processing protein DprA Machinery gene
  EYC28_RS05375 minE 1127047..1127280 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  EYC28_RS05380 minD 1127277..1128083 (-) 807 WP_001019032.1 septum site-determining protein MinD -
  EYC28_RS05385 ilvC 1128107..1129099 (-) 993 WP_001207741.1 ketol-acid reductoisomerase -
  EYC28_RS05395 - 1129348..1130130 (+) 783 WP_001168309.1 NAD+ synthase -
  EYC28_RS05400 - 1130127..1131065 (+) 939 WP_000833970.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15194.74 Da        Isoelectric Point: 8.8777

>NTDB_id=348382 EYC28_RS05365 WP_000599206.1 1125839..1126243(-) (dprB) [Helicobacter pylori strain 125C7]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEACENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=348382 EYC28_RS05365 WP_000599206.1 1125839..1126243(-) (dprB) [Helicobacter pylori strain 125C7]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAACGAAAGCTATGCGGACACGAACGCACGCATTGAGCATTTCATTAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAGGACAGATCCAGCATAGAAGCCTGTGAAAATTTAGGGCATTTGGGCAAGAAAAATAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.737

99.254

0.94

Multiple sequence alignment