Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | GIX96_RS05535 | Genome accession | NZ_CP045863 |
| Coordinates | 1163711..1164187 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186738.1 | Uniprot ID | B7UP40 |
| Organism | Escherichia coli O157:H7 strain ATCC 43890 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1158711..1169187
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GIX96_RS05515 (GIX96_05515) | - | 1159989..1160894 (+) | 906 | WP_153782195.1 | diguanylate cyclase regulator RdcB family protein | - |
| GIX96_RS05520 (GIX96_05520) | - | 1160891..1161961 (+) | 1071 | WP_000102669.1 | patatin-like phospholipase family protein | - |
| GIX96_RS05525 (GIX96_05525) | - | 1162301..1163119 (+) | 819 | WP_001234682.1 | DUF932 domain-containing protein | - |
| GIX96_RS05530 (GIX96_05530) | - | 1163210..1163695 (+) | 486 | WP_000214398.1 | antirestriction protein | - |
| GIX96_RS05535 (GIX96_05535) | radC | 1163711..1164187 (+) | 477 | WP_001186738.1 | RadC family protein | Machinery gene |
| GIX96_RS05540 (GIX96_05540) | - | 1164250..1164471 (+) | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| GIX96_RS05545 (GIX96_05545) | - | 1164634..1165008 (+) | 375 | WP_001280954.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| GIX96_RS05550 (GIX96_05550) | - | 1165055..1165429 (+) | 375 | WP_000854914.1 | TA system toxin CbtA family protein | - |
| GIX96_RS05555 (GIX96_05555) | - | 1165426..1165917 (+) | 492 | WP_000976853.1 | DUF5983 family protein | - |
| GIX96_RS05560 (GIX96_05560) | - | 1165929..1166126 (+) | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| GIX96_RS05565 (GIX96_05565) | - | 1166211..1167053 (+) | 843 | WP_001280481.1 | DUF4942 domain-containing protein | - |
| GIX96_RS05575 (GIX96_05575) | ghrA | 1167524..1168462 (+) | 939 | WP_000351284.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17673.28 Da Isoelectric Point: 6.9242
>NTDB_id=348270 GIX96_RS05535 WP_001186738.1 1163711..1164187(+) (radC) [Escherichia coli O157:H7 strain ATCC 43890]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=348270 GIX96_RS05535 WP_001186738.1 1163711..1164187(+) (radC) [Escherichia coli O157:H7 strain ATCC 43890]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
71.519 |
0.392 |