Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EYB51_RS22495 Genome accession   NZ_CP036356
Coordinates   4087784..4088071 (+) Length   95 a.a.
NCBI ID   WP_029439400.1    Uniprot ID   -
Organism   Bacillus sp. SYJ     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4082784..4093071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYB51_RS22475 - 4083970..4084167 (+) 198 WP_001048099.1 DUF4083 domain-containing protein -
  EYB51_RS22480 - 4084191..4084652 (+) 462 WP_000024988.1 NUDIX hydrolase -
  EYB51_RS22485 nadE 4084698..4085516 (-) 819 WP_000174883.1 ammonia-dependent NAD(+) synthetase -
  EYB51_RS22490 - 4085788..4087668 (+) 1881 WP_131101951.1 ABC transporter permease -
  EYB51_RS22495 abrB 4087784..4088071 (+) 288 WP_029439400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EYB51_RS22500 - 4088345..4089295 (+) 951 WP_001089039.1 serine protease -
  EYB51_RS22505 ugpC 4089509..4090612 (-) 1104 WP_131101952.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  EYB51_RS22510 - 4090880..4091743 (-) 864 WP_087964312.1 helix-turn-helix domain-containing protein -
  EYB51_RS22515 - 4091812..4092672 (-) 861 WP_074607210.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10631.41 Da        Isoelectric Point: 7.9574

>NTDB_id=348178 EYB51_RS22495 WP_029439400.1 4087784..4088071(+) (abrB) [Bacillus sp. SYJ]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLKKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=348178 EYB51_RS22495 WP_029439400.1 4087784..4088071(+) (abrB) [Bacillus sp. SYJ]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCACTTGAAATTTTCGTAGAAGAAGATAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAAGAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

53.846

95.789

0.516

Multiple sequence alignment