Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EYB51_RS20500 Genome accession   NZ_CP036356
Coordinates   3686206..3686808 (-) Length   200 a.a.
NCBI ID   WP_000155595.1    Uniprot ID   -
Organism   Bacillus sp. SYJ     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3681206..3691808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYB51_RS20480 dnaD 3681516..3682223 (+) 708 WP_000728549.1 DNA replication protein DnaD -
  EYB51_RS20485 nth 3682239..3682886 (+) 648 WP_000933027.1 endonuclease III -
  EYB51_RS20490 - 3682890..3683408 (+) 519 WP_033692812.1 YpoC family protein -
  EYB51_RS20495 - 3683432..3686140 (-) 2709 WP_073542155.1 PBP1A family penicillin-binding protein -
  EYB51_RS20500 recU 3686206..3686808 (-) 603 WP_000155595.1 Holliday junction resolvase RecU Machinery gene
  EYB51_RS20505 - 3686912..3687937 (+) 1026 WP_087964994.1 DUF2515 domain-containing protein -
  EYB51_RS29125 - 3688087..3688263 (-) 177 WP_002020884.1 hypothetical protein -
  EYB51_RS20510 - 3688349..3688591 (+) 243 WP_001252039.1 hypothetical protein -
  EYB51_RS20515 - 3688607..3688951 (+) 345 WP_000872961.1 YppE family protein -
  EYB51_RS20520 - 3688976..3689167 (-) 192 WP_000242660.1 YppF family protein -
  EYB51_RS20525 - 3689345..3689893 (+) 549 WP_131101776.1 YppG family protein -
  EYB51_RS20530 - 3690048..3690470 (+) 423 WP_000546264.1 CotD family spore coat protein -
  EYB51_RS20535 - 3690528..3691082 (+) 555 WP_000862921.1 DUF1273 domain-containing protein -
  EYB51_RS20540 gpsB 3691180..3691518 (+) 339 WP_000622430.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23338.66 Da        Isoelectric Point: 9.5337

>NTDB_id=348177 EYB51_RS20500 WP_000155595.1 3686206..3686808(-) (recU) [Bacillus sp. SYJ]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKYIIAFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=348177 EYB51_RS20500 WP_000155595.1 3686206..3686808(-) (recU) [Bacillus sp. SYJ]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAGCCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAATATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment