Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EYB51_RS19190 Genome accession   NZ_CP036356
Coordinates   3442861..3443184 (-) Length   107 a.a.
NCBI ID   WP_060630023.1    Uniprot ID   A0A164MRU2
Organism   Bacillus sp. SYJ     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3437861..3448184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYB51_RS19165 - 3438133..3439419 (+) 1287 WP_000247010.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EYB51_RS19170 - 3439612..3440181 (+) 570 WP_087965356.1 signal peptidase I -
  EYB51_RS19175 - 3440244..3440831 (+) 588 WP_000172849.1 CalY family protein -
  EYB51_RS19180 - 3440993..3441763 (+) 771 WP_131101696.1 DUF4047 domain-containing protein -
  EYB51_RS19185 calY 3442187..3442780 (+) 594 WP_087965352.1 biofilm matrix protein CalY -
  EYB51_RS19190 sinR 3442861..3443184 (-) 324 WP_060630023.1 helix-turn-helix domain-containing protein Regulator
  EYB51_RS19195 - 3443264..3443398 (-) 135 WP_048526766.1 anti-repressor SinI family protein -
  EYB51_RS19200 inhA1 3443741..3446131 (+) 2391 WP_131101698.1 M6 family metalloprotease immune inhibitor InhA1 -
  EYB51_RS19205 - 3446303..3447670 (+) 1368 WP_087951728.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12329.16 Da        Isoelectric Point: 8.5614

>NTDB_id=348175 EYB51_RS19190 WP_060630023.1 3442861..3443184(-) (sinR) [Bacillus sp. SYJ]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETAKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=348175 EYB51_RS19190 WP_060630023.1 3442861..3443184(-) (sinR) [Bacillus sp. SYJ]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAGCAAAGGAAAATCACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAGCTCAGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A164MRU2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment