Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EYB51_RS18705 Genome accession   NZ_CP036356
Coordinates   3352991..3354817 (+) Length   608 a.a.
NCBI ID   WP_087965497.1    Uniprot ID   -
Organism   Bacillus sp. SYJ     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3347991..3359817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYB51_RS18685 - 3348313..3348987 (-) 675 WP_087965501.1 TerC family protein -
  EYB51_RS18690 mecA 3349315..3349998 (+) 684 WP_000350711.1 adaptor protein MecA Regulator
  EYB51_RS18695 - 3350071..3351615 (+) 1545 WP_000799204.1 cardiolipin synthase -
  EYB51_RS18700 - 3351696..3352940 (+) 1245 WP_131101628.1 competence protein CoiA family protein -
  EYB51_RS18705 pepF 3352991..3354817 (+) 1827 WP_087965497.1 oligoendopeptidase F Regulator
  EYB51_RS28965 - 3354936..3355109 (-) 174 WP_000754593.1 hypothetical protein -
  EYB51_RS18710 - 3355339..3356232 (-) 894 WP_131101630.1 ClpXP adapter SpxH family protein -
  EYB51_RS18715 - 3356232..3356630 (-) 399 WP_131101632.1 globin -
  EYB51_RS18720 - 3356809..3357387 (-) 579 WP_131101634.1 CYTH domain-containing protein -
  EYB51_RS18725 - 3357532..3357903 (+) 372 WP_131101636.1 hypothetical protein -
  EYB51_RS18730 - 3357934..3358572 (+) 639 WP_001081480.1 GTP pyrophosphokinase family protein -
  EYB51_RS18735 - 3358591..3359388 (+) 798 WP_069355213.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70317.59 Da        Isoelectric Point: 4.6458

>NTDB_id=348174 EYB51_RS18705 WP_087965497.1 3352991..3354817(+) (pepF) [Bacillus sp. SYJ]
MSEQNTAKTLPDRNEIEESNTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=348174 EYB51_RS18705 WP_087965497.1 3352991..3354817(+) (pepF) [Bacillus sp. SYJ]
ATGTCTGAACAAAACACAGCAAAAACATTACCAGATCGTAACGAGATTGAAGAATCAAATACTTGGCGATTAGAAGATAT
TTTTCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCATTAAATGACCGCGCGACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATATCAGAAGATACGCTACAAACATTTTTAA
AAGAAAATAGAGACTTAAGTGTATATGAACATGCATTAGAAGAAATTACGCGCCAACGTCCGCACGTATTATCTGAAGCG
GAAGAGGCTTTATTAGCAGAAGCATCTGAAGTAATGAGTGCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAAGTAGAAATCACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGCGAAGATGCGTTCAAAGCTGTATATGAAACGTACGGAAAATATAAGAACACATTTGCAAGTACG
TTAAGCGGAGCTGTAAAGCGTAATAATTTTAATGCACGCGTTCGTAAATATGACTCTGCACGTCAAGCAGCATTAAGTAA
TAATAATATTCCTGAAGCGGTGTACGATCAACTCGTTGAATCTGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AATGTGAAGTATGAAGAAGCGCAAGACATGTTATTAAAGTCTTTACATGTACTTGGTGATGAGTATGTTGATATTTTGAA
AGAAGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCTTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAATTTGGCCATTCT
GTCCATAGTTACTACACAAGAAAAACGCAGCCGCACGTATACGGTGACTATTCAATCTTCGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCGCTTCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATTATTCATAAGAAAGTACAA
GAGGGACATGCGGTAACGCCAGACATGTTAACGGAGATCTACTATGATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATTGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GATTTAGTGCAGCAACGGCTCTATCTAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCAGATTATCCAATTGAAGTGCTGAAGAAAGCTGGAGTAGATATGGCATCTCCAGAACCAGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCTTTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.253

97.533

0.49

Multiple sequence alignment