Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EYB51_RS12920 Genome accession   NZ_CP036356
Coordinates   2224895..2225179 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus sp. SYJ     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2219895..2230179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYB51_RS12885 tmk 2220046..2220672 (+) 627 WP_087966748.1 dTMP kinase -
  EYB51_RS12890 holB 2220708..2221691 (+) 984 WP_000978579.1 DNA polymerase III subunit delta' -
  EYB51_RS12895 - 2221697..2222524 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  EYB51_RS12900 yabA 2222539..2222892 (+) 354 WP_000412055.1 DNA replication initiation control protein YabA -
  EYB51_RS12905 - 2223013..2223753 (+) 741 WP_087966747.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  EYB51_RS12910 - 2223740..2224030 (+) 291 WP_029439096.1 GIY-YIG nuclease family protein -
  EYB51_RS12915 rsmI 2223999..2224874 (+) 876 WP_029439097.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EYB51_RS12920 abrB 2224895..2225179 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EYB51_RS12925 metG 2225698..2227680 (+) 1983 WP_087966745.1 methionine--tRNA ligase -
  EYB51_RS12930 - 2227847..2228614 (+) 768 WP_029439099.1 TatD family hydrolase -
  EYB51_RS12935 rnmV 2228829..2229386 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=348160 EYB51_RS12920 WP_000843036.1 2224895..2225179(-) (abrB) [Bacillus sp. SYJ]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=348160 EYB51_RS12920 WP_000843036.1 2224895..2225179(-) (abrB) [Bacillus sp. SYJ]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTACGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACAGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment