Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   EYB51_RS12720 Genome accession   NZ_CP036356
Coordinates   2187483..2188610 (+) Length   375 a.a.
NCBI ID   WP_000470746.1    Uniprot ID   A0A243B7E4
Organism   Bacillus sp. SYJ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2182483..2193610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYB51_RS12690 spoIIIJ 2182528..2183295 (-) 768 WP_087968542.1 YidC family membrane integrase SpoIIIJ -
  EYB51_RS12695 rnpA 2183348..2183695 (-) 348 WP_029440294.1 ribonuclease P protein component -
  EYB51_RS12700 rpmH 2183772..2183906 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  EYB51_RS12705 dnaA 2184472..2185812 (+) 1341 WP_000428025.1 chromosomal replication initiator protein DnaA -
  EYB51_RS12710 dnaN 2185991..2187130 (+) 1140 WP_001212891.1 DNA polymerase III subunit beta -
  EYB51_RS12715 yaaA 2187258..2187470 (+) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  EYB51_RS12720 recF 2187483..2188610 (+) 1128 WP_000470746.1 DNA replication/repair protein RecF Machinery gene
  EYB51_RS12725 gyrB 2188649..2190571 (+) 1923 WP_000435986.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  EYB51_RS12730 gyrA 2190660..2193131 (+) 2472 WP_131101225.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43304.63 Da        Isoelectric Point: 6.7809

>NTDB_id=348158 EYB51_RS12720 WP_000470746.1 2187483..2188610(+) (recF) [Bacillus sp. SYJ]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=348158 EYB51_RS12720 WP_000470746.1 2187483..2188610(+) (recF) [Bacillus sp. SYJ]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAGTTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAGAATGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAGGGGAAGTTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTGCAAAGATATTGCAAAAGCGTTTTGAATTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTACTTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCACAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATCCTTTTATTGGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A243B7E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653

Multiple sequence alignment