Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GIJ02_RS17560 Genome accession   NZ_CP045827
Coordinates   3424992..3426419 (+) Length   475 a.a.
NCBI ID   WP_000980546.1    Uniprot ID   -
Organism   Escherichia coli strain AUSMDU00014361     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3419992..3431419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIJ02_RS29685 - 3420457..3420579 (-) 123 Protein_3474 hypothetical protein -
  GIJ02_RS17545 (GIJ02_17530) - 3421890..3422828 (-) 939 Protein_3476 FUSC family protein -
  GIJ02_RS17550 (GIJ02_17535) sbmC 3423026..3423499 (-) 474 WP_001105384.1 DNA gyrase inhibitor SbmC -
  GIJ02_RS17555 (GIJ02_17540) dacD 3423617..3424783 (-) 1167 WP_000830141.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GIJ02_RS17560 (GIJ02_17545) sbcB 3424992..3426419 (+) 1428 WP_000980546.1 exodeoxyribonuclease I Machinery gene
  GIJ02_RS17565 (GIJ02_17550) tsuB 3426462..3426689 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GIJ02_RS17570 (GIJ02_17555) tsuA 3426703..3427761 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  GIJ02_RS17575 (GIJ02_17560) plaP 3427940..3429298 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GIJ02_RS17580 (GIJ02_17565) yoeI 3429288..3429350 (-) 63 WP_010723108.1 membrane protein YoeI -
  GIJ02_RS17585 (GIJ02_17570) yeeY 3429565..3430494 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  GIJ02_RS17590 (GIJ02_17575) yeeZ 3430540..3431364 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54528.82 Da        Isoelectric Point: 5.3498

>NTDB_id=348153 GIJ02_RS17560 WP_000980546.1 3424992..3426419(+) (sbcB) [Escherichia coli strain AUSMDU00014361]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQETRAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=348153 GIJ02_RS17560 WP_000980546.1 3424992..3426419(+) (sbcB) [Escherichia coli strain AUSMDU00014361]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGACACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTACGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGTGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579