Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EYB51_RS06585 Genome accession   NZ_CP036356
Coordinates   1043530..1044276 (-) Length   248 a.a.
NCBI ID   WP_000487010.1    Uniprot ID   Q81LT9
Organism   Bacillus sp. SYJ     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1038530..1049276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYB51_RS06570 dnaG 1039299..1041095 (-) 1797 WP_000528216.1 DNA primase -
  EYB51_RS29440 - 1041449..1041580 (-) 132 WP_087965954.1 hypothetical protein -
  EYB51_RS28855 - 1041769..1041912 (-) 144 WP_154696893.1 hypothetical protein -
  EYB51_RS06575 - 1041948..1042760 (-) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  EYB51_RS06580 - 1042790..1043422 (-) 633 WP_000583759.1 helix-turn-helix transcriptional regulator -
  EYB51_RS06585 recO 1043530..1044276 (-) 747 WP_000487010.1 DNA repair protein RecO Machinery gene
  EYB51_RS06590 - 1044310..1044453 (-) 144 WP_000883924.1 YqzL family protein -
  EYB51_RS06595 era 1044630..1045535 (-) 906 WP_087965953.1 GTPase Era -
  EYB51_RS06600 - 1045528..1045926 (-) 399 WP_001086294.1 cytidine deaminase -
  EYB51_RS06605 - 1046026..1046379 (-) 354 WP_078417922.1 diacylglycerol kinase family protein -
  EYB51_RS06610 ybeY 1046376..1046846 (-) 471 WP_000054692.1 rRNA maturation RNase YbeY -
  EYB51_RS06615 - 1046843..1048987 (-) 2145 WP_000946450.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28665.22 Da        Isoelectric Point: 8.0540

>NTDB_id=348143 EYB51_RS06585 WP_000487010.1 1043530..1044276(-) (recO) [Bacillus sp. SYJ]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=348143 EYB51_RS06585 WP_000487010.1 1043530..1044276(-) (recO) [Bacillus sp. SYJ]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGTCGGTTAGCATCTGTTTCGCAGCTTATGA
CACATGGTCATTTCCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACAAAAATGCTTCCGGTATTAGGGATGCGCCCATACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGGGAGGGCGGTTTTCTGTGCTCACGTCATGCTGAGCAAGATCAGTATCGTATACCAGTGGG
GGAAGCCGTTCATAAATTATTGCGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81LT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552

Multiple sequence alignment