Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   EYB51_RS06325 Genome accession   NZ_CP036356
Coordinates   991216..992259 (-) Length   347 a.a.
NCBI ID   WP_061658329.1    Uniprot ID   -
Organism   Bacillus sp. SYJ     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 986216..997259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYB51_RS06300 - 987742..988344 (+) 603 WP_069297276.1 hypothetical protein -
  EYB51_RS06305 - 988489..989070 (-) 582 WP_069297275.1 hypothetical protein -
  EYB51_RS06310 - 989365..989562 (+) 198 WP_069297274.1 hypothetical protein -
  EYB51_RS06315 comGC 990091..990180 (-) 90 Protein_1030 comG operon protein ComGC -
  EYB51_RS06320 comGB 990192..991223 (-) 1032 WP_087966001.1 competence type IV pilus assembly protein ComGB -
  EYB51_RS06325 comGA 991216..992259 (-) 1044 WP_061658329.1 competence protein ComGA Machinery gene
  EYB51_RS06330 - 992458..993153 (+) 696 WP_000434132.1 helix-turn-helix domain-containing protein -
  EYB51_RS06335 - 993279..993521 (+) 243 WP_000440717.1 DUF2626 domain-containing protein -
  EYB51_RS06340 - 993629..995023 (+) 1395 WP_087965999.1 L-cystine transporter -
  EYB51_RS06345 - 995239..995454 (-) 216 WP_131100734.1 DUF3912 family protein -
  EYB51_RS06350 - 995707..996018 (+) 312 WP_001093243.1 hypothetical protein -
  EYB51_RS06355 - 996054..996542 (-) 489 WP_131100736.1 hypothetical protein -
  EYB51_RS06360 - 996622..996996 (-) 375 WP_087965993.1 nucleoside 2-deoxyribosyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39150.58 Da        Isoelectric Point: 9.0895

>NTDB_id=348142 EYB51_RS06325 WP_061658329.1 991216..992259(-) (comGA) [Bacillus sp. SYJ]
MNGIESFANTILKEACRVQASDLHIVPRQKDVVVQLRIGKDLMTKQCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLHYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRSDDLLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDARGAILRFIDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKGANGEC
VTSKHETLESSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=348142 EYB51_RS06325 WP_061658329.1 991216..992259(-) (comGA) [Bacillus sp. SYJ]
ATGAATGGAATTGAAAGCTTTGCGAATACGATTTTGAAAGAAGCGTGCAGGGTACAAGCGTCGGATTTACACATTGTGCC
CCGACAGAAGGATGTAGTGGTTCAACTGCGTATAGGGAAAGATTTAATGACGAAACAATGCATTGAAAAGGAGTTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCGCTGTAT
TTACAAATGGATGGACAGGAAGTGTATTTACGTCTTTCTACGCTTCCAACTGTATATCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
ATTATTCCCATGGGTTACTCGTATTTACTGGACCGACTGGTTCTGGGAAGACAACAACGATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGCCGCATCGTTACACTGGAGGATCCAGTTGAAAAAAGAAGTGACGATTTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGACATTTAGTAATGACGACACTGCAT
ACAAATGATGCGAGAGGGGCGATACTCAGGTTCATAGATTTTGGCATAACGAGGCAAGAGATTGAACAATCTTTATTAGC
TATAGCTGCACAGAGACTTGTCGAATTAAAGTGTCCGTTTTGTAAAAGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTAAGACAAGCGAGTATTTATGAGTTGTTATATGGATATGAATTAAAACAAGCGATTAAAGGAGCAAACGGGGAATGC
GTCACATCCAAGCATGAAACGTTAGAATCTTCGATAAGAAAAGGATACGCTTTAGGATTTTTAGAAGAGGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.061

100

0.571

Multiple sequence alignment