Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CA11_RS06410 Genome accession   NZ_CP036353
Coordinates   1688084..1688575 (+) Length   163 a.a.
NCBI ID   WP_002647595.1    Uniprot ID   -
Organism   Gimesia maris strain CA11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1683084..1693575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA11_RS06395 (CA11_13240) - 1686204..1686830 (+) 627 WP_002647598.1 50S ribosomal protein L25 -
  CA11_RS06400 (CA11_13250) pth 1686886..1687455 (+) 570 WP_002647597.1 aminoacyl-tRNA hydrolase -
  CA11_RS06405 (CA11_13260) rpsF 1687583..1687999 (+) 417 WP_002647596.1 30S ribosomal protein S6 -
  CA11_RS06410 (CA11_13270) ssb 1688084..1688575 (+) 492 WP_002647595.1 single-stranded DNA-binding protein Machinery gene
  CA11_RS06415 (CA11_13280) rplI 1688663..1689169 (+) 507 WP_002647594.1 50S ribosomal protein L9 -
  CA11_RS06420 (CA11_13290) dnaB 1689373..1690800 (+) 1428 WP_154897890.1 replicative DNA helicase -
  CA11_RS06425 (CA11_13300) - 1690849..1692816 (+) 1968 WP_154897891.1 hypothetical protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17062.75 Da        Isoelectric Point: 4.7821

>NTDB_id=348127 CA11_RS06410 WP_002647595.1 1688084..1688575(+) (ssb) [Gimesia maris strain CA11]
MASFNKVILVGNLTRDPQVRYTPGGSAVAEIGLAVNRSWFDKNSNSRKEETTFVDVTLWGRTAEVASEYLTKGRSVLIEG
RLQLDQWDDKESGQKRSKLKVVGENMTMLGGKGESGGGGGAPSGGGGGYASRGNAPSQGGGSSPADSFYDDTPGGIPDDD
VPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=348127 CA11_RS06410 WP_002647595.1 1688084..1688575(+) (ssb) [Gimesia maris strain CA11]
ATGGCCAGTTTTAATAAAGTCATACTGGTAGGCAATTTGACACGCGACCCACAGGTACGCTATACACCGGGGGGGAGTGC
GGTCGCGGAAATTGGTCTCGCTGTGAATCGCAGCTGGTTTGACAAGAACTCGAATTCCCGCAAAGAAGAAACCACGTTCG
TTGACGTGACGCTATGGGGACGCACTGCAGAAGTAGCCAGCGAATATCTGACCAAGGGGCGTTCCGTTCTGATTGAAGGT
CGTCTGCAGCTGGATCAGTGGGATGATAAAGAGTCCGGACAGAAACGGAGCAAGCTCAAGGTGGTAGGCGAAAACATGAC
CATGCTGGGCGGCAAAGGTGAGTCTGGCGGCGGTGGTGGTGCACCATCGGGTGGTGGTGGCGGATATGCCTCACGTGGAA
ACGCTCCTTCGCAGGGTGGCGGTTCCAGTCCGGCAGATTCATTTTATGATGATACGCCTGGTGGGATTCCTGATGATGAT
GTGCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

43.085

100

0.497
  ssb Neisseria gonorrhoeae MS11

37.143

100

0.399
  ssb Neisseria meningitidis MC58

36.571

100

0.393
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.286

100

0.368

Multiple sequence alignment