Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   GII76_RS20880 Genome accession   NZ_CP045826
Coordinates   4028569..4029258 (-) Length   229 a.a.
NCBI ID   WP_029318588.1    Uniprot ID   -
Organism   Bacillus subtilis strain 73     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4023569..4034258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII76_RS20860 (GII76_20860) yxeA 4024474..4024821 (-) 348 WP_003227084.1 YxeA family protein -
  GII76_RS20865 (GII76_20865) yxdM 4024835..4026703 (-) 1869 WP_003227080.1 ABC transporter permease YxdM -
  GII76_RS20870 (GII76_20870) yxdL 4026678..4027451 (-) 774 WP_032676945.1 ABC transporter ATP-binding protein YxdL -
  GII76_RS20875 (GII76_20875) yxdK 4027595..4028572 (-) 978 WP_003227076.1 two-component system sensor histidine kinase YxdK -
  GII76_RS20880 (GII76_20880) braR 4028569..4029258 (-) 690 WP_029318588.1 two-component system response regulator YxdJ Regulator
  GII76_RS20885 (GII76_20885) iolJ 4029366..4030238 (-) 873 WP_015250854.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  GII76_RS20890 (GII76_20890) iolI 4030259..4031095 (-) 837 WP_003227070.1 2-keto-myo-inositol isomerase -
  GII76_RS20895 (GII76_20895) iolH 4031181..4032050 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  GII76_RS20900 (GII76_20900) iolG 4032070..4033104 (-) 1035 WP_003227066.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26584.38 Da        Isoelectric Point: 4.9502

>NTDB_id=348098 GII76_RS20880 WP_029318588.1 4028569..4029258(-) (braR) [Bacillus subtilis strain 73]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSLLSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=348098 GII76_RS20880 WP_029318588.1 4028569..4029258(-) (braR) [Bacillus subtilis strain 73]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGTGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCTTGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406