Detailed information NTG0347960

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: GII76_RS01290
• Genome accession: NZ_CP045826
• Coordinates: 217697..218830 (+)
• Length: 377 a.a.
• NCBI ID: WP_087961655.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain 73
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 212697..223830

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GII76_RS01265 (GII76_01265)	-	213592..213870 (+)	279	WP_017696800.1	hemolysin XhlA family protein	-
GII76_RS01270 (GII76_01270)	-	213886..214149 (+)	264	WP_095843439.1	phage holin	-
GII76_RS01275 (GII76_01275)	-	214201..215175 (+)	975	WP_095843440.1	N-acetylmuramoyl-L-alanine amidase	-
GII76_RS01280 (GII76_01280)	-	215213..215653 (-)	441	WP_042977637.1	SMI1/KNR4 family protein	-
GII76_RS01285 (GII76_01285)	-	215666..217486 (-)	1821	WP_128473524.1	T7SS effector LXG polymorphic toxin	-
GII76_RS01290 (GII76_01290)	rapC	217697..218830 (+)	1134	WP_087961655.1	tetratricopeptide repeat protein	Regulator
GII76_RS21635	-	218820..218978 (+)	159	WP_164907155.1	hypothetical protein	-
GII76_RS01295 (GII76_01295)	-	219010..219342 (-)	333	WP_087961654.1	YolD-like family protein	-
GII76_RS01300 (GII76_01300)	-	219448..219675 (+)	228	WP_087961653.1	hypothetical protein	-
GII76_RS01305 (GII76_01305)	-	219668..219880 (+)	213	WP_087961652.1	transcriptional regulator	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 44585.91 Da
• Isoelectric Point: 5.4591

>NTDB_id=347960 GII76_RS01290 WP_087961655.1 217697..218830(+) (rapC) [Bacillus subtilis strain 73]
MNPVLPSSHVGVKITEWYKMIRQFSVPDAEILKAEVEREIKQMEEDEYLLIYYSLMSFRHQLMLDYLEPEKKYRTARPTI
SELLEKIEAPQKKLTGLLKYYSLFFRGMYEFDQQEFVEAINYYRKAEKELYAVTDEIEQAEFHFKVAEAYYNMKQTHVSM
HHILKALEIYDQNPLYTVRKIQSLFVIVGNYLDFKHYEKGLKHLEEALKLSKELGHDRLISSALYNLGECYHYMGQPSKA
EGYLKEAAEVAERANLRTLPHTLHSLATVLFKQEKFNEGQKVLQQGIETAQKFNDELFLSMNQFLNALYIESVDKQGILN
ILNHLNESHMFSFTEHITLLTAEYYREGGEFEESSFFYDKMVEAQLQIQRGDCLYEY

Nucleotide

• Length: 1134 bp

>NTDB_id=347960 GII76_RS01290 WP_087961655.1 217697..218830(+) (rapC) [Bacillus subtilis strain 73]
GTGAATCCGGTTTTACCTTCCTCACATGTAGGGGTTAAGATTACCGAATGGTATAAGATGATACGTCAGTTTAGTGTTCC
GGATGCTGAAATTTTAAAAGCAGAAGTTGAAAGAGAAATTAAACAAATGGAAGAGGATGAGTATTTACTAATTTATTACT
CACTAATGAGCTTTCGACACCAACTTATGCTCGACTACTTAGAGCCGGAAAAAAAGTATAGAACAGCACGTCCAACCATC
TCAGAATTACTTGAAAAAATTGAAGCTCCCCAAAAGAAATTAACCGGTCTCCTGAAATATTACTCACTATTTTTCCGCGG
TATGTATGAATTTGATCAGCAAGAATTCGTGGAAGCTATTAACTATTACCGTAAAGCTGAAAAAGAACTTTATGCTGTTA
CTGATGAAATCGAACAAGCTGAATTTCATTTTAAGGTGGCAGAAGCTTATTACAACATGAAACAAACTCACGTTTCCATG
CATCACATTTTAAAGGCATTAGAGATTTATGATCAGAATCCGCTGTATACTGTAAGGAAAATTCAAAGCTTGTTTGTAAT
CGTAGGTAACTATCTCGATTTTAAACATTATGAAAAAGGGTTAAAACATCTTGAAGAAGCCCTGAAGCTTTCTAAGGAAT
TAGGGCACGACAGACTAATAAGTTCTGCTTTGTATAATTTAGGTGAATGTTATCATTACATGGGACAACCAAGTAAAGCT
GAAGGATATTTGAAAGAAGCAGCTGAGGTTGCAGAAAGAGCAAATTTAAGGACACTTCCTCATACGCTCCATTCGTTGGC
CACAGTTTTATTCAAGCAGGAAAAGTTTAATGAAGGACAGAAGGTTTTACAGCAAGGGATCGAAACAGCACAAAAATTCA
ATGATGAACTTTTCCTATCGATGAATCAGTTTCTGAATGCCCTATATATTGAGTCTGTTGATAAACAGGGTATCCTCAAT
ATATTGAATCATCTTAATGAAAGTCACATGTTTTCATTTACGGAACACATAACGCTGCTAACTGCAGAATATTATAGAGA
AGGCGGAGAATTTGAAGAATCCAGTTTTTTCTATGATAAAATGGTTGAAGCGCAGCTTCAAATTCAGCGAGGTGACTGTT
TATATGAGTATTAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (197-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	43.467	99.469	0.432
rapF	Bacillus subtilis subsp. subtilis str. 168	40.212	100	0.403