Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   GII77_RS19190 Genome accession   NZ_CP045825
Coordinates   3719960..3721093 (-) Length   377 a.a.
NCBI ID   WP_015251020.1    Uniprot ID   -
Organism   Bacillus subtilis strain 75     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3714960..3726093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII77_RS19150 (GII77_19150) ywnA 3715124..3715525 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  GII77_RS19155 (GII77_19155) ureC 3715660..3717369 (-) 1710 WP_003243090.1 urease subunit alpha -
  GII77_RS19160 (GII77_19160) ureB 3717366..3717740 (-) 375 WP_015251023.1 urease subunit beta -
  GII77_RS19165 (GII77_19165) ureA 3717737..3718054 (-) 318 WP_003227724.1 urease subunit gamma -
  GII77_RS19170 (GII77_19170) - 3718249..3718407 (-) 159 WP_144050515.1 hypothetical protein -
  GII77_RS19175 (GII77_19175) - 3718580..3718843 (-) 264 WP_015251022.1 branched-chain amino acid ABC transporter substrate-binding protein -
  GII77_RS19180 (GII77_19180) csbD 3719064..3719252 (-) 189 WP_015251021.1 stress response protein CsbD -
  GII77_RS19185 (GII77_19185) - 3719325..3719804 (-) 480 WP_003244390.1 hypothetical protein -
  GII77_RS19190 (GII77_19190) rapC 3719960..3721093 (-) 1134 WP_015251020.1 response regulator aspartate phosphatase RapB Regulator
  GII77_RS19195 (GII77_19195) moaA 3721285..3722310 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  GII77_RS19200 (GII77_19200) fdhD 3722326..3723114 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  GII77_RS19205 (GII77_19205) - 3723347..3723508 (-) 162 WP_003227706.1 hypothetical protein -
  GII77_RS19210 (GII77_19210) ywmD 3723603..3724277 (-) 675 WP_003243553.1 VWA domain-containing protein -
  GII77_RS19215 (GII77_19215) - 3724330..3724470 (-) 141 WP_003227702.1 hypothetical protein -
  GII77_RS19220 (GII77_19220) ywmC 3724601..3725284 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45038.16 Da        Isoelectric Point: 4.7546

>NTDB_id=347937 GII77_RS19190 WP_015251020.1 3719960..3721093(-) (rapC) [Bacillus subtilis strain 75]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=347937 GII77_RS19190 WP_015251020.1 3719960..3721093(-) (rapC) [Bacillus subtilis strain 75]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCAGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424