Detailed information NTG0347900

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: GII77_RS13550
• Genome accession: NZ_CP045825
• Coordinates: 2614585..2615712 (-)
• Length: 375 a.a.
• NCBI ID: WP_015251664.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain 75
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2609585..2620712

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GII77_RS13540 (GII77_13540)	spoIVCA	2610315..2611775 (-)	1461	WP_235701260.1	site-specific DNA recombinase SpoIVCA	-
GII77_RS21695	-	2611733..2611911 (-)	179	Protein_2641	hypothetical protein	-
GII77_RS13545 (GII77_13545)	-	2612555..2613652 (-)	1098	WP_032726210.1	glycosyl hydrolase	-
GII77_RS21700	-	2614154..2614243 (-)	90	Protein_2643	hypothetical protein	-
GII77_RS13550 (GII77_13550)	rapC	2614585..2615712 (-)	1128	WP_015251664.1	Rap family tetratricopeptide repeat protein	Regulator
GII77_RS21705	-	2616106..2616186 (+)	81	Protein_2645	RNA polymerase subunit sigma	-
GII77_RS13555 (GII77_13555)	-	2616492..2617166 (+)	675	WP_015251663.1	TraX family protein	-
GII77_RS13560 (GII77_13560)	-	2617305..2617439 (+)	135	WP_015251662.1	hypothetical protein	-
GII77_RS13565 (GII77_13565)	-	2617550..2617709 (+)	160	Protein_2648	hypothetical protein	-
GII77_RS13570 (GII77_13570)	-	2618079..2619845 (+)	1767	WP_015251660.1	T7SS effector LXG polymorphic toxin	-
GII77_RS13575 (GII77_13575)	-	2619859..2620323 (+)	465	WP_015251659.1	SMI1/KNR4 family protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44234.49 Da
• Isoelectric Point: 5.6727

>NTDB_id=347900 GII77_RS13550 WP_015251664.1 2614585..2615712(-) (rapC) [Bacillus subtilis strain 75]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIDE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYIDFKRYEKSQPHLEKALELSRELNNKRLISSALYNLGTNFADSGDYEQAEV
FMKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLKALYVDAVDQHGVNQTI
EYLEKNKNYSYVEDIACETADAYANLKEFETSYVYHQKMVETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=347900 GII77_RS13550 WP_015251664.1 2614585..2615712(-) (rapC) [Bacillus subtilis strain 75]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTTCC
GGATGCAGAGATTTTAAAGGCAGAGGTGGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCCTAATGAAATTCCGTCATCAACTCATGTTAGATTATTTGGAACCAGTAACAACACGTATAAGACCAACTATTGACGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGTCTTTTGTCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCATTGGATATTTATAATCAATATGAACTTTATAAGGTGCGGAAAGTTCAATGTATGTTTGTTATTTCAGG
GAATTATATAGATTTTAAACGTTATGAAAAAAGTCAGCCGCATCTTGAAAAAGCATTAGAGTTATCGAGGGAATTGAATA
ACAAGAGGTTGATTAGTTCTGCGTTATATAATTTAGGCACAAATTTTGCTGACAGTGGCGATTACGAGCAAGCGGAAGTA
TTCATGAAGCAAGCTGTGGAGATAACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAAGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGTTATTTAAAAGCTCTTTACGTCGATGCGGTGGATCAACATGGAGTTAATCAAACCATA
GAATACTTAGAGAAGAATAAGAACTATTCTTATGTTGAAGACATTGCCTGTGAGACCGCAGATGCTTATGCAAACTTAAA
AGAATTTGAAACATCTTATGTTTACCATCAGAAAATGGTTGAAACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (193-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	43.883	100	0.44
rapF	Bacillus subtilis subsp. subtilis str. 168	39.418	100	0.397