Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   M013TW_RS08425 Genome accession   NC_016928
Coordinates   1711385..1712659 (+) Length   424 a.a.
NCBI ID   WP_000102738.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus M013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1706385..1717659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M013TW_RS08395 (M013TW_1642) mnmA 1706587..1707705 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  M013TW_RS08400 (M013TW_1643) - 1707706..1708848 (-) 1143 WP_000409170.1 cysteine desulfurase family protein -
  M013TW_RS08405 (M013TW_1644) - 1709160..1710173 (+) 1014 WP_000985904.1 LLM class flavin-dependent oxidoreductase -
  M013TW_RS08410 (M013TW_1645) - 1710410..1710556 (-) 147 WP_000009238.1 SAS049 family protein -
  M013TW_RS08415 (M013TW_1646) - 1710596..1710778 (-) 183 WP_000752909.1 CsbD family protein -
  M013TW_RS08420 (M013TW_1647) - 1710878..1711300 (-) 423 WP_000704122.1 Rrf2 family transcriptional regulator -
  M013TW_RS08425 (M013TW_1648) rarA 1711385..1712659 (+) 1275 WP_000102738.1 replication-associated recombination protein A Machinery gene
  M013TW_RS08430 (M013TW_1649) - 1712821..1713594 (-) 774 WP_000682646.1 tRNA threonylcarbamoyladenosine dehydratase -
  M013TW_RS08435 (M013TW_03450) - 1713594..1713722 (-) 129 WP_031845039.1 hypothetical protein -
  M013TW_RS08445 (M013TW_1650) aspS 1714055..1715821 (-) 1767 WP_000044807.1 aspartate--tRNA ligase -
  M013TW_RS08450 (M013TW_1651) hisS 1715837..1717099 (-) 1263 WP_000590822.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47234.81 Da        Isoelectric Point: 8.3539

>NTDB_id=34786 M013TW_RS08425 WP_000102738.1 1711385..1712659(+) (rarA) [Staphylococcus aureus subsp. aureus M013]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=34786 M013TW_RS08425 WP_000102738.1 1711385..1712659(+) (rarA) [Staphylococcus aureus subsp. aureus M013]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGTCAAGCGTTA
ACTCGTGCAATAGAGGATGAAGAGAATGGTTTAAAAACATATCAACCCAAAATTGATGAAGATGCCATGGCCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAAGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686

Multiple sequence alignment